Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00823 ATGGGGAAAAAAGGGAGTTGGTTTTCTGCAGTGAAGAAAGTTTTCAGTCATGATTCAAGAAAAGACAAGAAAACTAAGAAATCAAAGAAAAAAAGTGCTCAAAAGGAGTCAGAAGTGGAATCAGAAGAAGCACAAGTTGTTGATGTGAAATTAAGTGAGGTAGAGAATGAACAAAATAAACAAGCAATTTCTCTTGCTTTTGCCACTGCTGCCGCCGCAGGGGCTGCTGTTGCTGCTGCTCAGGCTGCTGCTGAGGTTGTTCGTCTCACGAGTATGCCTCATTTCCCCGCAAAAACTAAGGAAAAATTGGCTGCTATCAAGATTCAAACAGCGTTCCGCGGATATTTGGCGAGAAGAGCGTTGCGAGCATTGAGAGGCTTGGTGAGGTTGAAGACAATGGTACAAGGACAATCAGTTAAAAGGCAAGCAGACAGCACCTTAAGATGCATGCAAACTCTAGCAAGATTGCAGTCACAGGTTCGCGAGAGGCGAATTCGAATGTCCGAGGAAAATCAGGCTCTTCAGAGGCAACTACAACAAAAACACGAAAAAGAACTTGTGAAGTTGCAAGCTTTTGGAATTGGAGAAGATTGGAATGCTAGCTTGCAGTCAAAGGAACAAATTGAAGCAAAATTGTTGCAAAGGCAAGAAGCTGCTTTCAAAAGAGAGAGGGCTTTGGCTTATTCATTCTCACATCAGAAAACATGGAAGAATTCTTCAAAATCTATGAACGAAACATTTATGGATCCAAAAAATCCTCATTGGGGATGGAGTTGGTTAGAGAGATGGATGGCAACTCGACCGTGGGAAGGCGAAAGCTTCATTATGAATCATAATGATCATGCATCTATTAAGAGTTCTTCATCAAAGCATAATTATGTTCTTAATTATGATAACAAACCTTCCCCAAGTAGCCAAAAATCAAAAAGACAAACCATTCATAATTCTCCTTCAACTTCAAATGCAAGGCCATCAAGCTCAAAAGGTGGTGAAATTACTGATGATTCAAGAAGCATGTTTAGTGCTCAATCCGAACGGTATCGAAGATATAGTAGTATTGCAGGATCATCCGTTAGAGATGATGCGAGCGTTGAAAGCTCGCCGGTGTTTCCTAGTTACATGGCACTCACAAGTTCAGCTAAGGCAAAGTCCAAATTAATGCAAAGACAATCACCATCTTCAATTTCTGCAAGGAAGAGGCTTTCTTTCCCTGCTTCTCCGGTTGGTTCAAGAAGGCATTCCGGTCCACCGAAGGTGGAAATATAA 1266 0.4155 MGKKGSWFSAVKKVFSHDSRKDKKTKKSKKKSAQKESEVESEEAQVVDVKLSEVENEQNKQAISLAFATAAAAGAAVAAAQAAAEVVRLTSMPHFPAKTKEKLAAIKIQTAFRGYLARRALRALRGLVRLKTMVQGQSVKRQADSTLRCMQTLARLQSQVRERRIRMSEENQALQRQLQQKHEKELVKLQAFGIGEDWNASLQSKEQIEAKLLQRQEAAFKRERALAYSFSHQKTWKNSSKSMNETFMDPKNPHWGWSWLERWMATRPWEGESFIMNHNDHASIKSSSSKHNYVLNYDNKPSPSSQKSKRQTIHNSPSTSNARPSSSKGGEITDDSRSMFSAQSERYRRYSSIAGSSVRDDASVESSPVFPSYMALTSSAKAKSKLMQRQSPSSISARKRLSFPASPVGSRRHSGPPKVEI 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00823 421 MobiDBLite consensus disorder prediction 292 340 - -
Trre12g00823 421 Coils Coil 157 184 - -
Trre12g00823 421 MobiDBLite consensus disorder prediction 17 42 - -
Trre12g00823 421 MobiDBLite consensus disorder prediction 379 400 - -
Trre12g00823 421 MobiDBLite consensus disorder prediction 379 421 - -
Trre12g00823 421 SMART iq_5 100 122 IPR000048 GO:0005515
Trre12g00823 421 Pfam IQ calmodulin-binding motif 104 122 IPR000048 GO:0005515
Trre12g00823 421 Gene3D - 81 129 - -
Trre12g00823 421 ProSiteProfiles IQ motif profile. 101 129 IPR000048 GO:0005515
Trre12g00823 421 PANTHER IQ-DOMAIN 5-RELATED 1 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00823 Trre-Chr12 7349826 7352394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00823 1 420 IQD Protein Family AT5G03040 48.387 6.09e-123 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00823 - - cam:101501235 490.345