Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00818 ATGTCGCTGGAACCGTTGGATCGAAAGAGCTCGTTTAGGGAGAGGAAGCGCCACGAGAGTTCTGAGTCTTTTGGGTCTGTGGCTAGATGGAGAGGATCTACTTCTTATAACCGGTCGCGTGAGTTCAATCGTGGTGGCGATTATCGGAGACTAGGAGGTCATCGTAAGCAGGGTAGCTGGCAGCTATTTCCAGAAGAATCTGGTCAACGGCACATGATTTCTCGACCTTGTGACCGGAGGCTGGAGGAAGATAACTATCGCCCGTCGTTTTCTCGAGGGGATGGAAAGTATGGAAGGGGCAATAAGGAAAGTAGAGGAGCCTTTAGCCAGAGAGAATGGAGAGGGCGTTCATCAGAAACCACAAACAACTCTCTGAATATGTCCAGGAGGCAAACCAATGCAAGTAATGATCGCAAGTCAGTTGATGATATGCTAACATATTCCTCTCATTCACATTCTGACTTAGTAAATACTTGGGAGCAGCATAACATGAAAGACCAGCATGATAAGATGGGTGGTGTTAATCGGTTTGTTACAGAGCAGAGAAATGATAGGGATAGTTCATTGGGTACAATTGACTGGAAGCCCCTTAAATGGACCCGGCCTGGATCCTCTTCACGAGACTCAGGTTTTAGCCGCTCAAGTGGCATGAGGAGCTTAGGAGGGACAAATTCGTTGGGAAGCTGTGAATGGAAGGTTGGGTTGCAACAAAAATTTGCCACTGCTGTTGAGTCAAATTCAGGGGAAGCTGCTACATGTCGTGCATCGTCTGCTTTATCCGAAGAGGAAAATTCGAGGAAGAAGCCTAGGCTAAAATGGGGTGAGGGACTTGCAAAGTTTGAGAGAAAGCAAGTTGAGGGGCCTGAGGTAACTTCAAACAATGATGACCCTGTCTCACTTCCTTTCAATATGGAACCCAATAATTTCCTCAGTACTGGCTTAGTAGATAGAAGCCCTAAAGTTTCAGGACTCTCAGGGTGTGCATCTCCTGCAACTCCATCTTCGGCTGCCCGCAGCTCTTCACCAGGTGCAGATGATAAATTGTTTGAAAAAGCTGCAAATGTGGACAATGATGTTGGTAACTTGAGTAGTTCACCTGGTCCTGGGTCTCAAAGTCATCTGCAGATGCTTTCTTTCGATTTAGAGAAGATGGATATTGACACATTGATTAGTTTGGGCTCTTCACTTGTTGAGTTGTTACCACAGTCTGATAATCTGAGCTCTGTGGATTATAGTTTATTAATTTCCAACACAATGAATAAGCTGCTGATATTGAAAGCGGACATTTCAAAGGTATTAGAGGTCACTGAAACTGAAATTGATTTACTTGAAAATGAACTTAGATCTCTAAAATCTGAATCTAAGGATAGATTTCAATGTTCAGAAGCAGTTGGCTCTCTGCTAATTCCATGTACTTATAGGCATGTTACCAATGTCTCGGCTTGTGGTGATAGTAATTCATCTTTGGAGGTTAAAGATGGTGTGGATGCTAAGTCTAGTGCGAGCACTGGGGATATTTTATGCGATACAATTATTTCTTGCAATGAAAAAACTGCAAAAGCAGCATGTGAAGTGTTTGATAAGTTATTGCCTGAAAAATGTTGCAAGAACGAGAATATTGGAGCTAGCAGTGGTTCATGCTCTCATAATGGCACACTTATTAAGGAAAAATTTGCTGAGAGAAGGCGATTGGCAAGATTGAAGGAGAGAATTATAACACTCAAGTTTAAAGCCTTGCATCACTTGTGGAAAGAAGATACGCGTTTACTGTCTATTAGGAAACACCGCCCAAAATCTCACAAGAAACTCGAATCAGAGCTACGCACTACCAGTAATAGTCATCAGAAGAAGCGGTCTTCTATTCCTTTCCGTTTTCCCTTCCCTGCAGGAAACCAACTGAAATTGGTTCCAACATCTGAGATGATTAAGTATACAAGCCAACTGCTTTCAGAATCCAAACATGAAATTCACAGAAGCACCTTGAAGATGCCAACATTAATTTTGGATCAAAAGGACAAAATGTATACAATGTTTTTATCTAGCAATGGGCTGGTTGAAGATCCAGTGGCTATTGAGAAAGAAAGGATCATGATAAACCCTTGGTCTGCAGAAGAGAAAGAGATTTTCTTGGAGAAATTTGCTGCCTATGGAAAAGATTTTCGGAAAATTGCTACTTTCCTTGACCACAAGACAACGGCCGACTGTGTTGAATTTTACTACAAAAATCATAAGTCTGATTGTTTTGAGAAAATTAAGAAAAAAGATGATGACAAGCTAGGGAGATTTTTCAAAGCCAAAACTGACTTGATAGCATCAGGTGTAAAATGTAACTCTGAAGTGAATGCTTCTTCACTTGATATTTTGAGTGAAGCTTCTTCAGTGATGGCAGATGACATTGCACGTGATCGTAAAATGCGTTCAGGAAGTTCCTTATGGAGGGGTTATAATAATAAGGCCATGTCAAGGTGTGACAATATCATTTCAGAGAGGTTGGACAGTTTTGACCTTCTTCAAGATGAAAGAGAGACTGTTGCAGCTGATGTATTGGCTAGTATATGTGGTTGTCTTTTATCCGAGGCAACGAGTTCCTGCATAACTAGTTCAGTTGATCCCGTGAAAGGTAAAAGGGTCGTCAAGAAGTGCGTGAAAGCGAAGCCTCTATCCAAAAAACCTCCGATGCCAGACATTACTCAAAATGTTGATCATGAAACTTGTTCCGACGAGAGCTGTGGTGAAATGGAACTTACTGATTGGTCAGATGTGGAGAAGGCAGCCTTTCTTCATGCTGTATCATTGTTTGGTAAGGATTTCGCAATGATTGCACAGCGTGTCAGAACAAGATCCCAATACCAGTGCAAAGTGTTTTTTAGCAAGACTCAGAAACGTCTTAGATTGAATCGCATGGGTCACCAACCTGAAAATGTTGGATCACTGGTGAATGATGGTGTGGATGGTGCCAGGAGTGATGCAGATAATGCATGCGTTGTAGAGACAGGTTCAGCCAATGGCTCTGATTCATCAGGCACTAAAACAGCCGTGGACCAGCCTGCATCTGATAAGAACATGTATCATGATGAATCCAATCCTGTAGAAGCTAGCAACCTGTCAGCTGACTTGTATAAATCAGAGGAAATTAATAGGAAGGTAGATCATGAAGATGTAGATATGGTTTCTAATGCTTGTGTGATTGGTAGTGAGTCTAAACTGTGCACTGATGGTAATGTAGGTGTCTTGAATGGTTCTGATAGGTCTGGTTCTGTCCGGGAGCAGAGAGCTATAGTTATGTCAGATAGCACAGAAATTGGAAAAAATGAACCCAGTGAAGGGGGAGGTGCAGTTACAGAATTGGTGTCTGGTATGGGGACAATGGAACCATGCTGCTCTAATTCTATTGCTGAGGGTAGACTAGTTTCTGACGTTTCTTCTGCACAACGGGGAAATGAATTGGAGGGCTCAACTATATGTCTAGTTGATAGAGATGAAGCTGATACAGATGTTGTGATTGAATTGAAAGGCAATGTCCACGATTCCAGCACTTTGGTGAATACTTCATTATCATCTGTGGATGTTTCCTGTCAAAGATTGAGTGTTGAAGCTGAAAATGAGCCCCAACTATGCCTTGAAAAACCTCAATTCTCAGGATCATCAGAGGGCCCACTCTCAAATGCAACATCAACATTGCAATATTCTGGTGCTGCTGTGCAATACAAGAAAACATCTAGCCAAGATCTACCGTCTTGTGATTTTCAGGGAAACCAAGATATGACTAGGCACAATTGCAGTAGTAATCTTGGCCATCAGCTTTGTACTTCTGGGAATTCACTGGACCATGTTGAGGCTGCTAGAGTCCTTCAATGCTATAATTTGCAAGCACCTTCTGAGAAGGAAGTGAATGTGAATATGAGCTGCAGCAGTTCAGCGACTGAATTGCCACTTTTGTCCCAGAAGATTGATTTAGAAGAACCACCCAGAAATGATGTGAAAATATTCGGAAAGATACTCACCAATCCTTCATCCACCCTAGGTGTAAAGGAAAATGAAGAAAATGGTACCCATCATCCGAAGTTAAGCAGTGGCTCTTCTTGTCTGAAATTAACCGGCCATGATAATAATACTGGTGGAAAATCAACTATTTTGAATGTTGATCTTAATGATTGCCGGGTCTTTGAAAATGTTCCTGTTGGGAACAAAATGCAGCCTGTTTTCTCATCACTCCCTGATTCTGCCATTTTGCTTGCCAAATATCCTGCTGCATTTGGTAGTTATGGTCTTGAAGCAGTCTCAAGTTTACCGCTGCAAGTTACAAAAATGTCAACATCAAATGGTATTGGTGAACCAGGGATTCTTGCAGGTGGATCCACCACCATTGTTGACCAGTTTGTTGGTCAAACTGGGAGTGCAATAAAAGAAGATGAACCTGTGGGAGAGAAAAAGGATTTGAATAGTTAG 4449 0.4203 MSLEPLDRKSSFRERKRHESSESFGSVARWRGSTSYNRSREFNRGGDYRRLGGHRKQGSWQLFPEESGQRHMISRPCDRRLEEDNYRPSFSRGDGKYGRGNKESRGAFSQREWRGRSSETTNNSLNMSRRQTNASNDRKSVDDMLTYSSHSHSDLVNTWEQHNMKDQHDKMGGVNRFVTEQRNDRDSSLGTIDWKPLKWTRPGSSSRDSGFSRSSGMRSLGGTNSLGSCEWKVGLQQKFATAVESNSGEAATCRASSALSEEENSRKKPRLKWGEGLAKFERKQVEGPEVTSNNDDPVSLPFNMEPNNFLSTGLVDRSPKVSGLSGCASPATPSSAARSSSPGADDKLFEKAANVDNDVGNLSSSPGPGSQSHLQMLSFDLEKMDIDTLISLGSSLVELLPQSDNLSSVDYSLLISNTMNKLLILKADISKVLEVTETEIDLLENELRSLKSESKDRFQCSEAVGSLLIPCTYRHVTNVSACGDSNSSLEVKDGVDAKSSASTGDILCDTIISCNEKTAKAACEVFDKLLPEKCCKNENIGASSGSCSHNGTLIKEKFAERRRLARLKERIITLKFKALHHLWKEDTRLLSIRKHRPKSHKKLESELRTTSNSHQKKRSSIPFRFPFPAGNQLKLVPTSEMIKYTSQLLSESKHEIHRSTLKMPTLILDQKDKMYTMFLSSNGLVEDPVAIEKERIMINPWSAEEKEIFLEKFAAYGKDFRKIATFLDHKTTADCVEFYYKNHKSDCFEKIKKKDDDKLGRFFKAKTDLIASGVKCNSEVNASSLDILSEASSVMADDIARDRKMRSGSSLWRGYNNKAMSRCDNIISERLDSFDLLQDERETVAADVLASICGCLLSEATSSCITSSVDPVKGKRVVKKCVKAKPLSKKPPMPDITQNVDHETCSDESCGEMELTDWSDVEKAAFLHAVSLFGKDFAMIAQRVRTRSQYQCKVFFSKTQKRLRLNRMGHQPENVGSLVNDGVDGARSDADNACVVETGSANGSDSSGTKTAVDQPASDKNMYHDESNPVEASNLSADLYKSEEINRKVDHEDVDMVSNACVIGSESKLCTDGNVGVLNGSDRSGSVREQRAIVMSDSTEIGKNEPSEGGGAVTELVSGMGTMEPCCSNSIAEGRLVSDVSSAQRGNELEGSTICLVDRDEADTDVVIELKGNVHDSSTLVNTSLSSVDVSCQRLSVEAENEPQLCLEKPQFSGSSEGPLSNATSTLQYSGAAVQYKKTSSQDLPSCDFQGNQDMTRHNCSSNLGHQLCTSGNSLDHVEAARVLQCYNLQAPSEKEVNVNMSCSSSATELPLLSQKIDLEEPPRNDVKIFGKILTNPSSTLGVKENEENGTHHPKLSSGSSCLKLTGHDNNTGGKSTILNVDLNDCRVFENVPVGNKMQPVFSSLPDSAILLAKYPAAFGSYGLEAVSSLPLQVTKMSTSNGIGEPGILAGGSTTIVDQFVGQTGSAIKEDEPVGEKKDLNS 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00818 1482 MobiDBLite consensus disorder prediction 179 223 - -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 202 223 - -
Trre12g00818 1482 ProSiteProfiles SANT domain profile. 696 747 IPR017884 -
Trre12g00818 1482 Pfam Myb-like DNA-binding domain 700 741 IPR001005 -
Trre12g00818 1482 Pfam Myb-like DNA-binding domain 917 957 IPR001005 -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 1 24 - -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 244 270 - -
Trre12g00818 1482 SUPERFAMILY Homeodomain-like 684 744 IPR009057 -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 71 112 - -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 325 341 - -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 26 41 - -
Trre12g00818 1482 ProSiteProfiles SANT domain profile. 913 964 IPR017884 -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 597 618 - -
Trre12g00818 1482 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 486 1314 - -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 244 259 - -
Trre12g00818 1482 Coils Coil 426 453 - -
Trre12g00818 1482 CDD SANT 918 956 IPR001005 -
Trre12g00818 1482 Gene3D - 677 749 - -
Trre12g00818 1482 FunFam Metastasis-associated 1 family, member 3 697 757 - -
Trre12g00818 1482 SMART sant 697 745 IPR001005 -
Trre12g00818 1482 SMART sant 914 962 IPR001005 -
Trre12g00818 1482 Gene3D - 873 974 - -
Trre12g00818 1482 SUPERFAMILY Homeodomain-like 916 964 IPR009057 -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 1340 1362 - -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 113 139 - -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 321 345 - -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 998 1035 - -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 1 139 - -
Trre12g00818 1482 MobiDBLite consensus disorder prediction 998 1016 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00818 Trre-Chr12 7295543 7305064 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g00818 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00818 - - tpra:123910846 2588.53