LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g00813	ATGGCTTGTAACACATTGATGAGTTCAGCTATATCAGCTTTTCCATCACTTCTTTCTTCATCAAAATCAAGATTTGCAAATTCACTTCCAAGTTTTGCTTCTTGCAATGCATCTTCTTCTAAATTCACTATGACTGCTGATAATTGGATGCCTGGCCAGCCTAGACCACCTTATCTTGATGGTTCAGCTCCAGGTGACTTTGGATTTGATCCTCTTCGCCTTGGCGAAGTACCAGAGAATCTTGAGAGATTCAAAGAGTCTGAACTCATTCACTGCCGATGGGCAATGCTCGCTGTTCCAGGGATTTTGATACCAGAGGCATTAGGGTTAGGAAATTGGGTAAAAGCACAAGAATGGGCAGCACTACCTGGTGGACAAGCAACCTACTTAGGAAACCCTGTTCCATGGGGTACCCTACCTACCATTTTGGTAATTGAATTCCTTTCTATTGCTTTTGTTGAGCACCAAAGGAGTATGGAGAAAGACCCTGAGAAGAAGAAATACCCTGGTGGTGCTTTCGATCCTTTGGGTTACTCTAAAGACCCTAAAAAGTTCCATGAATACAAAATCAAAGAAGTTAAGAATGGACGTCTTGCTTTATTGGCTTTTGTTGGAATCTGTGTTCAACAATCAGCTTATCCAGGAACTGGACCTTTGGAGAATTTGGCTACTCACTTGGCTGATCCATGGCACAACAACATTGGAAATGTTCTTATTCCCCCTCAATAG	729	0.4225	MACNTLMSSAISAFPSLLSSSKSRFANSLPSFASCNASSSKFTMTADNWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILIPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGNVLIPPQ	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g00813	242	Gene3D	Chlorophyll a/b binding protein domain	50	236	-	-
	Trre12g00813	242	FunFam	Chlorophyll a-b binding protein, chloroplastic	50	236	-	-
	Trre12g00813	242	Pfam	Chlorophyll A-B binding protein	56	210	IPR022796	-
	Trre12g00813	242	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	22	235	IPR001344	GO:0009765\|GO:0016020
	Trre12g00813	242	SUPERFAMILY	Chlorophyll a-b binding protein	44	238	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g00813	Trre-Chr12	7253145	7255412	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g00813	1	197	Chloroplast and Mitochondria Gene Families	AT3G54890	78.109	3.36e-104	299

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g00813	K08907		-	gmx:100800350	437.958