Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00811 ATGGAGAAGAATCTTGATGAACATTCTAGCCCTCACAAAGATGAGGGAAACAACACTGATGTTGATGATACCTCTAAATCGTTGTTGTCGGAGACCAATGATAACGTCGAAGTCAAACCAGACAATGAAACTGAAAAGGTTGATGATGTAGATCATGTCGAGGGAGAGCCAAAAGAGGAGAAGGAGGATGAGGAAGGTGTAACCATCGAGGTTACACCACCTGAAACTCCTCCTCCTAACTTGGAGAAGGTTCTAGAAGACATTGATCGATTTTTAGCGACTATAGATGAGAACAATAACAATAACAATGTCAATGTGAATCCCAACGAAGAGAAGATTATTCCTGAATGTGTTGACAAGTTTTTGGATCTCGTGGAAGAGAAAATTGCGAAATATGATTCTGGTGAAACAAAGTGGGGTGAGGTCATGGAGGAAGATTCATCATTGTTGGAAGGTGTGAATCGCGTTTCGAAGATGATGAAATTGTTGAACACGATGATCATAGAGTTTCAATCTGGAGAGAAAGAAGCAGAAGGAGAAGGAGAAGTAGAAGGAGATGCAGAAAAGGAAAATGAAAAAGAAAATGATGAGAAAAAGGAAAAAAAGGATCAATCAGTATTAGTGAACCGCGTTGGCGCGATTCAACAACAAGCCATGTCGTATTTGGAGGAAGAGTTTCGTATGTTAATGGAAGAATCTAGAAACCAAAACAAAACAGAATCTGGTGGAACCAATGACTCGAAAGGGAAACATGTGGCAACATCAGAGGCATCGGAAAATGAATCAACAGAGACGGTTATGGATTTTCCAGGTTTTAAGGAGGAGGTCATTACAAATTTGAACAAGATAGCACGCGAGATGTTATTCGCAGGTTATGATTCAGAGTGCTGCCACATCTACACCGTTTCTAGAAAACACGGTTTCAGTGAAGGTTTATACAAGCTTGGATACGAAAGGATCAGCATGGATGAGATTCAAAAAATGCAATGGGAATCATTGGAGAGGGAGATTCCATCGTGGATCAACACATTCAAGGAATGCGCCACCGTGTGGTTCCCTGGCGAACGGAAGCTTGCTGCATCAATTTTCTCCGATCATCCATCAGTTGCTGACACACTCTACACCGAACTCACACGTGTGGTGGTGTTTCAGCTTCTTAACTTTGCTGAAAGTGTCGCGATGACAAAACGTGCTGCAGAGAAGCTCTTCAAGTATCTCGACATGTATGAGACATTAAGAGAAACAGTTCCAAATCTCGAGAAACTCTACCCGGAGGACATTGTTGATGATATCAAAGCTGAAATGACTTCGGCCAAGAATAGGCTTGGGGAGGCTGCAGTGTTGATATTTTGTGAACTTGAAAACTCGATCAAATCTGACTCTGGAAAAACACCAGTTGCCGGTGGCGCGGTTCATCCGCTAACTCGCTACATAGTGAACTATCTGAGACTTGCATGCGAGTATAAAGACACATTGGAAGAGGTTTTCCGAGAGCACTCAAAAATTGAGCGTGCTGATTCAACAAGCAGGCCACATTACGAAAATGACAGTCAACAGTCGAAAGAGAAAGAAAACATATCACCATTTGCGGCACAATTGACACGTGTAATGGAATTACTCGATGCAAATCTCGAAGGAAAAGCGAAACTCTACAAAGAAGTACCATTAAGTTGCATCTTTATGATGAACAATGGAAGGTACATTGTTCAAAAAATCAAAGGCTCAGCTGAAATCTACCAAGTGATGGGTGAAACTTGGTGTCGTAAGCGATCAACTGAATTGAGAACTTACCACAAAAACTATCAAGTAGAAACATGGAGTAAGATATCAACTTGTTTAAGTCCAAAAGGTTTAAGCGATAATGGGAAAGTTCCGAAGCCGGTGTTGAAAGAAAGGTTCAAGACTTTCAACACATTGTTTGATGAGATACATAAGACACAAAGCACATGGGTTGTGAGTGATGAACAACTTCAATCTGAGCTTAGAGTTTCAATTTCAGCACTTGTGATTCCTGCTTATAGATCATTTTTGGGGAGGTTTTCACAGTATTTGGATCCAGGGAGACAAACTGAGAAGTATATTAAGTTTCAAGCTGAGGATATAGAGAATTACATTTATGACTTGTTTGATGGTAATCCTCACACAGGCATGGTCAGGAAGAAAGCATGA 2169 0.4094 MEKNLDEHSSPHKDEGNNTDVDDTSKSLLSETNDNVEVKPDNETEKVDDVDHVEGEPKEEKEDEEGVTIEVTPPETPPPNLEKVLEDIDRFLATIDENNNNNNVNVNPNEEKIIPECVDKFLDLVEEKIAKYDSGETKWGEVMEEDSSLLEGVNRVSKMMKLLNTMIIEFQSGEKEAEGEGEVEGDAEKENEKENDEKKEKKDQSVLVNRVGAIQQQAMSYLEEEFRMLMEESRNQNKTESGGTNDSKGKHVATSEASENESTETVMDFPGFKEEVITNLNKIAREMLFAGYDSECCHIYTVSRKHGFSEGLYKLGYERISMDEIQKMQWESLEREIPSWINTFKECATVWFPGERKLAASIFSDHPSVADTLYTELTRVVVFQLLNFAESVAMTKRAAEKLFKYLDMYETLRETVPNLEKLYPEDIVDDIKAEMTSAKNRLGEAAVLIFCELENSIKSDSGKTPVAGGAVHPLTRYIVNYLRLACEYKDTLEEVFREHSKIERADSTSRPHYENDSQQSKEKENISPFAAQLTRVMELLDANLEGKAKLYKEVPLSCIFMMNNGRYIVQKIKGSAEIYQVMGETWCRKRSTELRTYHKNYQVETWSKISTCLSPKGLSDNGKVPKPVLKERFKTFNTLFDEIHKTQSTWVVSDEQLQSELRVSISALVIPAYRSFLGRFSQYLDPGRQTEKYIKFQAEDIENYIYDLFDGNPHTGMVRKKA 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00811 722 MobiDBLite consensus disorder prediction 1 79 - -
Trre12g00811 722 Pfam Exo70 exocyst complex subunit 339 705 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre12g00811 722 MobiDBLite consensus disorder prediction 503 521 - -
Trre12g00811 722 SUPERFAMILY Cullin repeat-like 194 710 IPR016159 -
Trre12g00811 722 PANTHER EXOCYST COMPLEX PROTEIN EXO70 122 711 IPR004140 GO:0000145|GO:0006887
Trre12g00811 722 MobiDBLite consensus disorder prediction 36 68 - -
Trre12g00811 722 MobiDBLite consensus disorder prediction 173 204 - -
Trre12g00811 722 MobiDBLite consensus disorder prediction 503 525 - -
Trre12g00811 722 MobiDBLite consensus disorder prediction 1 21 - -
Trre12g00811 722 Coils Coil 184 204 - -
Trre12g00811 722 FunFam Exocyst subunit Exo70 family protein 134 717 - -
Trre12g00811 722 MobiDBLite consensus disorder prediction 233 265 - -
Trre12g00811 722 MobiDBLite consensus disorder prediction 235 251 - -
Trre12g00811 722 Gene3D Exocyst complex component Exo70 186 718 - -
Trre12g00811 722 MobiDBLite consensus disorder prediction 186 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00811 Trre-Chr12 7241701 7243869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00811 15 712 EXO70 exocyst subunit family AT5G13990 47.462 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00811 K07195 - gmx:100819960 843.958