Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00794 ATGGCCTTAAATAAGACAGGAAACTTGTTAGGTACCAATGCCGGAGACGAGCATGGCTTGTTTTCTCAATACAACCAACAAGAATTACACAGTGGTGTTACAAATGTACATAATAATAATAATAATATCCCTAAACATGATGGAAGAGTTCCTGTTTCACCTTATATACCTCAAAATCGCGAGAATAGGTTTGGATTGAATAAGGAGAACGGCCGTGTTAGATACGAAGATCTCACCAATATTTTAGGGTTGAAGAGAATGGACTCTGAGACTTCTTCTGAGATGGGTGAGTTTATCCCTAACAGACAGCCAGCAGCACAAGAGATTGAAAACGGCGTTTCTCCAAACATTTTATGCAAAACTCAAAAGGGAGATGGCGACAACAGTGGCCGTGGTGTGTTGAAGAAGAGCTTTAGTGAAGTAATTAGTGACCAACATGGTACTAGGGCACCTGTATCACCGCCTATTTGCAGACATGAAAGATCTCACTCCAATGGATTTTCTGGTTCTGGAATTTTAGACGATTCTTTATCTTCCGGGAAAATAAAGTTTCTTTGCAGCTTCGGTGGAAAAATATTACCAAGGCCTGGTTATAGTAAACTCAGATATGTTGGTGGAGAAACCCACATTATATCTATCCGAAAGGATATTTTATGGGAAGAGCTTATGAACAAGACTTTAGGTATTTGCAGTCAACCTCACACGATCAAATACCAGCTTCCAGGGGAGGATCTTGATGCTCTAATATCGGTTTCCTCGGATGAAGATCTTCAAAATATGATAGAGGAATATCATGGACTTGAAAGTCACGAAGGTTCTCAGAAACTTCGAATTTTTTTAGTTCCTTTGGGTGAATCTGAAGAGACACCATCTACCGAGGCAAACACCGTTCGGCAGAATGATCCCGATTACCAATACGTTGTCGCTTTAAACGGCGTAATAGACCCTAGTCCTAAGAAAAACACCGGTGGACAGAGTTTGATAAACGAAGCAAATCAGCCAGTGACAACTTTCAATTTTACTCCAATAATTGTGGCTTCTCCTTTGGAGACCAGGGACGGTAATAAACGTATTAATGCTTTAAATCCAGATGGAATTTTGAATGATTCCCTAAATCTTCAAAGTGCATTACGAATTTCGCCTACTCCGGTTCAAGTTGCAGGTTCTAGTACAGGTTATATACAGTTGCTCGGTAACAACTCATGCCAGGGAAGTATTGACAGCAATGCATCATTTGTTACCGCTCAGGTAAACTCTGGAAATTCGAGCATAAATGCTGCTGATTGCCGATATCCTCAACAAGCATCTGTTACTTTGTTAAGTGATGGTCATCCTCGTCAACATGGCGACGTTGGTCCGCCGAAGAATCTCAATGGACAGTATTTTGACAACTACAATCCAGGCAATGGTTACAGTGATGAAGTTTTTGGTGGAACCTTGCATAAGGATAGAATACTCCACTCTGGAAATCCAATTGCTCAACAGGCCGAATCATATGGAACTAATAATGATCCGCCTCATGGGATGTCTCATGCTTTTTCTGATTCGCAGTTGCATGAGATTGGAGCACGGTCTGGTTACCGCTCACAAGAAGGAATTTCCCCGTCTTTCTCCTTGAACCTTGATAATTCCCAATTATCTTCGATGTTAGGTGTCTCACAAGTGAACCTTATGGAGGGTCAACATGATCCCTTCCTTCATCATCCTCAAATACAAAGTCGGATACCAAATGTGGAGTCAGCTGAGATGCATAGACGGCAAGGTATGGCATCTTCGTCTCCCTACTCGGAATCAGTAGGAACGAATGATCGTATCAATAAGGATAGCATTTTAACTGACAAAAAGTACCTTAATGCTCAAACTGACTTAAGTGGATCCGGCTTTGTAGAAAAGAACATCCCGGAACATTCTTTTAAATCAGAAAGGAGGATGATAAATGAAGAAAATAATCCTATTCCTAAGAAGGATAACAAGGTTTACGAGGGAAATTCCAGTGTCAATTATATGAGTGAGTTGCATCTTTTGGATACATTCCCTATTAATGACACAAGTGCTAAGATTGGTATGCAAAATAATCGGGAACAACCTTGTGAGGACATGCATCCTTCGTCATCAGGCATGATGGGACTCTCTCTAAATAACCTTGTGGACAAGACCCCGTCTGATCTGAATGGTAAACAAGCAATTGATTTTTCAGCCAGAAACATTGATTTAAATGCTCCGATCTTAATAGGTGCAGAAAGCTCGTGTGGCAAAAGTTCTGAAAGAGATCATATGTTCAAGTTTTCCTTTGATCCACATTCTCTTAAATCTGCACAAATTCAGCCTCCTCAGAATCAGACCGCTACAGTTTTTCATGATAATCCAACAATAAACTCTGAAAGTTTGTATCCTGCTGTACTTCATGATGATGTCCCTCCGAGCTTAAACTTGCCGGTTAGTGACCTGGATAATGCAAGTAACAATATTTCTTTTATAAAGGCGCCTTCTTTTCTCGATGACTGGCTTACAAGCACCGATCAAATGGCTGTTCAGTTTAAACGCGAACATTCTGCCTCCGGACTGTCAAAAGTTGACGATGTAATTTCAGGACAATCGAAAAACTCAGAAAGGTATAATGATGCAAACAGAGTGGCGCCATTTGTTGCAGTAGAAGATATGACTGGTGTTGTTCCTTCACATCAAAAGTCTTCAATAGTACACCCCCCGCATAATTTCGATGAAGCTGAAAGTGATTTATCTCCATCTCATACGGAAGTAGAGAGCACCATCCCAGAGTCTGATCTCGAGGATTTTAAAGACGACCAAACCGACATGAATGATTTCCTTTCTGATGTAATGATAGCAGAAATGGAGGCCAGCATATATGGTTTACAGATAATTAAGAATGTTGATCTTGAAGAACTTATGGAGTTAGGATCTGGTACCTATGGAACTGTTTATCATGGAAAATGGCGGGGAACGGATGTCGCAATCAAGAGAATTAAAAAGAGCTGCTTTGCAGGGAGATCTTCTGAACAAGAACGGTTGGCAAAAGATTTCTGGAGAGAGGCACAGATCCTGTCAAATCTTCACCATCCAAATGTGCTCGCATTTTATGGAATCGTACCGGACGGAGATGGCGGAACCTTAGCAACTGTAACAGAATATATGGTTAATGGTTCCCTTAGGCATGTCCTTGTCAAGAACAACAGATTACTAGATCGTCGTAAAAAGCTTATAATTGCCATGGATGCAGCTTTTGGTATGGAATATTTGCATTCGAAGAATATTGTCCATTTCGATTTGAAGTGTGACAATTTACTTGTCAATCTAAGGGATCCACAACGACCAATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAGCGTAACACGCTTGTATCTGGGGGTGTGCGAGGAACCCTTCCATGGATGGCACCAGAGTTGTTGAATGGTAATAGCAGCCGGGTTTCCGAAAAGGTTGATGTTTTCTCATTCGGCATCTCAATGTGGGAATTATTGACAGGAGAGGAACCTTATGCAGATATGCATTGTGGTGCCATTATTGGCGGAATTGTAAAGAACACACTCCGACCACCGATTCCAGAACGATGTGATCCTGAATGGAGAAAGCTTATGGAAGAATGTTGGTCACGTGACCCCGAATGTCGGCCATCATTCACCGAGATAACAAGCAGGTTAAGATCTATGTCCATGGCCACTCAAGGAAAGGGGAATTATCAAGCATGGCAGTTAAGACCTAGTAATGAACTTTGA 3762 0.4117 MALNKTGNLLGTNAGDEHGLFSQYNQQELHSGVTNVHNNNNNIPKHDGRVPVSPYIPQNRENRFGLNKENGRVRYEDLTNILGLKRMDSETSSEMGEFIPNRQPAAQEIENGVSPNILCKTQKGDGDNSGRGVLKKSFSEVISDQHGTRAPVSPPICRHERSHSNGFSGSGILDDSLSSGKIKFLCSFGGKILPRPGYSKLRYVGGETHIISIRKDILWEELMNKTLGICSQPHTIKYQLPGEDLDALISVSSDEDLQNMIEEYHGLESHEGSQKLRIFLVPLGESEETPSTEANTVRQNDPDYQYVVALNGVIDPSPKKNTGGQSLINEANQPVTTFNFTPIIVASPLETRDGNKRINALNPDGILNDSLNLQSALRISPTPVQVAGSSTGYIQLLGNNSCQGSIDSNASFVTAQVNSGNSSINAADCRYPQQASVTLLSDGHPRQHGDVGPPKNLNGQYFDNYNPGNGYSDEVFGGTLHKDRILHSGNPIAQQAESYGTNNDPPHGMSHAFSDSQLHEIGARSGYRSQEGISPSFSLNLDNSQLSSMLGVSQVNLMEGQHDPFLHHPQIQSRIPNVESAEMHRRQGMASSSPYSESVGTNDRINKDSILTDKKYLNAQTDLSGSGFVEKNIPEHSFKSERRMINEENNPIPKKDNKVYEGNSSVNYMSELHLLDTFPINDTSAKIGMQNNREQPCEDMHPSSSGMMGLSLNNLVDKTPSDLNGKQAIDFSARNIDLNAPILIGAESSCGKSSERDHMFKFSFDPHSLKSAQIQPPQNQTATVFHDNPTINSESLYPAVLHDDVPPSLNLPVSDLDNASNNISFIKAPSFLDDWLTSTDQMAVQFKREHSASGLSKVDDVISGQSKNSERYNDANRVAPFVAVEDMTGVVPSHQKSSIVHPPHNFDEAESDLSPSHTEVESTIPESDLEDFKDDQTDMNDFLSDVMIAEMEASIYGLQIIKNVDLEELMELGSGTYGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLAKDFWREAQILSNLHHPNVLAFYGIVPDGDGGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPIPERCDPEWRKLMEECWSRDPECRPSFTEITSRLRSMSMATQGKGNYQAWQLRPSNEL 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00794 1253 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1091 1103 IPR008271 GO:0004672|GO:0006468
Trre12g00794 1253 MobiDBLite consensus disorder prediction 901 915 - -
Trre12g00794 1253 SMART serkin_6 966 1235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00794 1253 Gene3D Phosphorylase Kinase; domain 1 959 1053 - -
Trre12g00794 1253 CDD PB1_UP2 185 280 - -
Trre12g00794 1253 ProSitePatterns Protein kinases ATP-binding region signature. 972 997 IPR017441 GO:0005524
Trre12g00794 1253 PRINTS Tyrosine kinase catalytic domain signature 1085 1103 IPR001245 GO:0004672|GO:0006468
Trre12g00794 1253 PRINTS Tyrosine kinase catalytic domain signature 1156 1178 IPR001245 GO:0004672|GO:0006468
Trre12g00794 1253 PRINTS Tyrosine kinase catalytic domain signature 1200 1222 IPR001245 GO:0004672|GO:0006468
Trre12g00794 1253 PRINTS Tyrosine kinase catalytic domain signature 1048 1061 IPR001245 GO:0004672|GO:0006468
Trre12g00794 1253 SUPERFAMILY Protein kinase-like (PK-like) 961 1228 IPR011009 -
Trre12g00794 1253 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1054 1245 - -
Trre12g00794 1253 CDD STKc_MAP3K-like 972 1229 - -
Trre12g00794 1253 PANTHER SERINE-THREONINE PROTEIN KINASE 226 1232 - -
Trre12g00794 1253 SUPERFAMILY CAD & PB1 domains 199 284 - -
Trre12g00794 1253 SMART PB1_new 196 283 IPR000270 GO:0005515
Trre12g00794 1253 Gene3D Transferase(Phosphotransferase) domain 1 1054 1250 - -
Trre12g00794 1253 ProSiteProfiles Protein kinase domain profile. 966 1234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00794 1253 Gene3D - 200 282 - -
Trre12g00794 1253 Pfam Protein tyrosine and serine/threonine kinase 969 1229 IPR001245 GO:0004672|GO:0006468
Trre12g00794 1253 MobiDBLite consensus disorder prediction 893 934 - -
Trre12g00794 1253 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 959 1053 - -
Trre12g00794 1253 Pfam PB1 domain 200 282 IPR000270 GO:0005515
Trre12g00794 1253 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 201 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00794 Trre-Chr12 6948573 6954660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00794 179 311 MAP Kinase Kinase Kinase AT1G16270 61.654 5.76e-41 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre12g00794 PK_Tyr_Ser-Thr 2.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00794 - - aprc:113862751 1599.33