Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00788 ATGGAGATAGAAACAGATTCAGTTTCTTCACCTTCCAAGGTTAAAGAAATCGACGGCCTCCTCGCAGACGTCGGTTACAAAGTTAAGTCATCTGAGCTACATCAAGTAGCTCAGAACATAGAACGGTTAGAGAATGTAATAGTGAATTCATCGTCAAGCGACATTTCTCAATTCGCTTCCGATACCGTTCACTACGATCCCTCCGACATTGGTAATTGGGTGGACAATCTCCTCTCGGAATTCGACCACAACGCTTCTTTACCTTATGATTTCTCTGAACTGCCAGATCTTGCACAAGATCAACACCACCAGCACCAGCACCACCACCACCAATTAAAGGTGGTTTCCACCGTCGAAGAAGACTCAGCAATAAAGCTTGTTCACATGCTGATGACATGCGCGGATTCGTTGCAACGTGGCAACATACAATTGGCTGGCTCGTTAATCGAAGGCATGCAAAGTTTGTTAGCAAACATGAACACGAACTCCGGCATCGGAAAAGTCGCCGGATACTTCATCGACGCTTTAAACCGTCGCATCTTCGGTCAAAACAATATCATCCATATAGAGAACGATGTTCTTTACCATCACTACTACGAAGCATGTCCATATCTCAAATTCGCTCACTTCACAGCAAATCAAGCTATACTTGAAGCTTTCAACGGTCACGATTGTGTCCACGTCATTGATTTCAACCTCATGCACGGTCTTCAATGGCCGGCGTTAATTCAAGCTCTAGCGCTTCGTCCTGGTGGACCTCCGTTTCTCCGTCTCACCGGCATTGGTCCGCCGTCGCATGATGACCGTGACAACCTCCGTGAAATTGGACTCCGTCTTGCCGAATTAGCTCGCTCCGTTAACGTTAGATTCGCTTTTCGTGGTGTCGCGGCGTGGCGGCTTGAAGATGTGAAGCCGTGGATGCTTCAGGTAAGTTCTAAAGAAGCCGTGGCGGTTAATTCTATTATGCAGCTTCATCGTCTTCTTGGATCTGAACCCGACCCGAATAATCCTCCCGCTATTGAAACGGTTTTGGGTTGGATCCGAAGTTTGAACCCGAAAATCATGACGGTTGTGGAACAAGAAGCGAATCATAACCAGGATGGGTTTATGGACCGGTTCACTGAATCATTACATTATTACTCGACCGTTTTTGACTCATTAGAAGCGTGTCCGGTTGAACCGGATAAAGCTATGGCTGAGATTTATTTACAGAGGGAGATTTGCAACGTGGTGTGTTGTGAAGGACCGGCTCGAGTGGAGAGACATGAACCGCTTGTTAAGTGGAGGGAACGGCTTGGTAAAACCGGGTTCAGACCGTTACATTTGGGTTCAAATGCTTTTAAACAAGCTAGTATGTTATTGACTCTGTTCTCAGCGGAGGGTTATTGCGTTGAAGAGAATCAAGGCAGCTTGACTTTGGGTTGGCATAGCCGTCCTCTCATTGCGGCTTCTGCTTGGCAAGCTGTGCCTGAAACGCTGCGTTTTGATAATTGA 1494 0.4679 MEIETDSVSSPSKVKEIDGLLADVGYKVKSSELHQVAQNIERLENVIVNSSSSDISQFASDTVHYDPSDIGNWVDNLLSEFDHNASLPYDFSELPDLAQDQHHQHQHHHHQLKVVSTVEEDSAIKLVHMLMTCADSLQRGNIQLAGSLIEGMQSLLANMNTNSGIGKVAGYFIDALNRRIFGQNNIIHIENDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPFLRLTGIGPPSHDDRDNLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSSKEAVAVNSIMQLHRLLGSEPDPNNPPAIETVLGWIRSLNPKIMTVVEQEANHNQDGFMDRFTESLHYYSTVFDSLEACPVEPDKAMAEIYLQREICNVVCCEGPARVERHEPLVKWRERLGKTGFRPLHLGSNAFKQASMLLTLFSAEGYCVEENQGSLTLGWHSRPLIAASAWQAVPETLRFDN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00788 497 Pfam GRAS domain family 126 487 IPR005202 -
Trre12g00788 497 FunFam DELLA protein GAI 16 81 - -
Trre12g00788 497 Pfam Transcriptional regulator DELLA protein N terminal 18 85 IPR021914 -
Trre12g00788 497 Gene3D - 16 81 IPR038088 -
Trre12g00788 497 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 106 483 IPR005202 -
Trre12g00788 497 SMART DELLA_2 18 91 - -
Trre12g00788 497 ProSiteProfiles GRAS family profile. 117 487 IPR005202 -
Trre12g00788 497 Coils Coil 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00788 Trre-Chr12 6905919 6907412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00788 17 487 GRAS Transcription Factor Family AT1G14920 48.728 6.69e-164 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre12g00788 GRAS 9.8e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00788 K14494 - gmx:100805968 744.191