Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00761 ATGGGGCAGGAGAGTCAGAGCCTCAAGGATTCCGCTGTTGTAGACAGTAGCATGGTCGTTGGCAAAGAGAATGACTGTTCGAGTGAAAATGTTTGTCCTGTTGGCCCTAGTCCGATGGAAATCAATGATGAATGTCAGACCTCAAATATTACGAATGAAGATAAATTTCATACTGATGTCGAAAGAGCACAGCTGTGTCAGAACCCTGATGCTACCTCTATATCTGTGACCGATACTGATGTAACAAACGAGGAGGAAATATATGTGGAACCAAATATTGGCATGGAGTTTAGATCAGAAGAGCATGCTTACAAGTGTTATAACAATTATGCTGTTCTGAAAGGTTTCAGCATAAGAAAGGATTTCATCAACAAAAGTAGGGTAGATGGTTCAGTGGTGTCCAGAAGATTCACCTGCCATAGACAGGGTTTTCGGTCTAATAAAGATTATAAAAATCCGAAGAATATCCAACAGGAAACAAGGACTGGTTGCTTGGCACATATGACTATTTCTCGTCAGTCAAATAGCAAGTTTCGTGTCACTAGTTTTGAAATAGAACACAATCATGAGTTTGTAACACCCTCTGATGCTCATATGTTGCCATCACATAAGAAATTGAGTTTTGCTCAAGCTGTTGAAGTGAATATAAATGAGTCGACTTTGGATGGGGTACCGAAACTGGGAATGGGATTTGATTCAGAGGAGCATGCATATGAATTTTATAATACATATGCTGCACAAGTAGGCTTCAGTGTGAGAAAAGATTATGTAAATAGGAGTAAAGTTGATGGCGCTGTAGCATCAAGAAGGTATACTTGCTTCAGAGAAGGTTTTCGGCAGAAAGAGAAACAAGGTAAGAATGTAAAGAGACCTCGGAAGGATACTAGAATCGGATGTTTAGCACAATTGATTATTTCTCGTCAGTCTGATGGCAGGTATCATATAACTCATTTTGAAGAAAAACACAATCATGAGCTAGTTGCTGCATGTAGAGTTCATATGTTACGATCACAGAAGAGATTAGCTGCAACTCGTGTTGAAGACAATATCGTAGCTGGGGGCAGTGCGCTGCCGAAGCCAGCCTCTGCATCCAATTGCAGGATAGTTGAAGGTTTTAACGAATTAGATTATGATCCTGTGGATTGTGAATATCAACTACCTTTCAAATGTACAAGAGAAATAAAAGAGGAAGAAATCGAAAAGATTAGGCTCTACTTTCAAAGCAAGAAAGCAAAGAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATGCAGAGAATCAAATAACTAATATATTTTGGGCTGATGAAAAGATGATAGTTGACTACAGTGATTTTGGTGACGTTGTTTGTTTTGATACGAGTTATAAATTTTATAAGGACTCACGCCCGTTTGTTCCATTTCTCGGTATAAATAATCACAGGCAAATGAATATCTTCGGGGCAGCACTTCTATACGATGAATCTGTGGAATCTTTTAAGTGGCTGTTTCATGTTTTCATTGAGGCTATGTCTGGAACCAAGCCAAAGACAATCCTAAGAGACCAAGATGCAATAATAGCTGAAGCTATTAATTCCATATTACCTCAAACAAAACAACGAGTTTGTGTTTGGCATGTCTACCAAGATGCCCTCAAGCAACTGAGTCATATGTCTGTTGAATCCGATTCTTTTGTACATGATTTGAGCTGCTGCTTTTTTAATCACGAGCAAGAAGAGGATTTTGTTAATGCATGGAATGCTCTCATGAACATGTATAATCTGTGGGAAAACGAATGGTTGCGTCAAATATTTGAAAGCCGGGACCAATGGGCCATAGCTTACAGAAGACACATTTTTTGTGCTGATCTCACAAGCTTGCTCATGCGAGAAAATCTTATTGGCAACTTGAAAAAGCACCTAAAGAATGACTCAAGTGTTCTTCCATTTCTCAAGCATCTTGGAAAGATGGTGACCGATTGGCACTACAAGGAATTAGAAGCTAATTATGACATAAGCAGGCATATGCCAGCCCTAATGGGCGATATCGTTACATTAAAGCATGCAAGAGATCCATACACACCAAAGATATTTGAGTTATTCCAGAAAGAATATGAAGCATGTTTAAATCTAGTGCTAAAGCCTTGCAGTGAGAGTGGTTCGTTGTATAATTATAAAGTTAGTGTGTATGAACAAGTCCGTGAGTATAGGGTTACTTTTGATTCGTCTAATGAGACTGTTAGTTGCAGCTGTATGAAGTTTGAGTGTGTCGGAGTCTTGTGCTGCCATGCATTAAAAGTTCTTGATTATAGGAACATAAGGATAGTTCCATCCAAGTACATCTTAAAGAGATGGACAAAAAATGCTAGAGTTTGA 2352 0.3878 MGQESQSLKDSAVVDSSMVVGKENDCSSENVCPVGPSPMEINDECQTSNITNEDKFHTDVERAQLCQNPDATSISVTDTDVTNEEEIYVEPNIGMEFRSEEHAYKCYNNYAVLKGFSIRKDFINKSRVDGSVVSRRFTCHRQGFRSNKDYKNPKNIQQETRTGCLAHMTISRQSNSKFRVTSFEIEHNHEFVTPSDAHMLPSHKKLSFAQAVEVNINESTLDGVPKLGMGFDSEEHAYEFYNTYAAQVGFSVRKDYVNRSKVDGAVASRRYTCFREGFRQKEKQGKNVKRPRKDTRIGCLAQLIISRQSDGRYHITHFEEKHNHELVAACRVHMLRSQKRLAATRVEDNIVAGGSALPKPASASNCRIVEGFNELDYDPVDCEYQLPFKCTREIKEEEIEKIRLYFQSKKAKNPSFFYAFQLDAENQITNIFWADEKMIVDYSDFGDVVCFDTSYKFYKDSRPFVPFLGINNHRQMNIFGAALLYDESVESFKWLFHVFIEAMSGTKPKTILRDQDAIIAEAINSILPQTKQRVCVWHVYQDALKQLSHMSVESDSFVHDLSCCFFNHEQEEDFVNAWNALMNMYNLWENEWLRQIFESRDQWAIAYRRHIFCADLTSLLMRENLIGNLKKHLKNDSSVLPFLKHLGKMVTDWHYKELEANYDISRHMPALMGDIVTLKHARDPYTPKIFELFQKEYEACLNLVLKPCSESGSLYNYKVSVYEQVREYRVTFDSSNETVSCSCMKFECVGVLCCHALKVLDYRNIRIVPSKYILKRWTKNARV 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00761 783 SMART 26again6 739 766 IPR006564 GO:0008270
Trre12g00761 783 Pfam SWIM zinc finger 728 763 IPR007527 GO:0008270
Trre12g00761 783 ProSiteProfiles Zinc finger SWIM-type profile. 728 764 IPR007527 GO:0008270
Trre12g00761 783 Pfam FAR1 DNA-binding domain 107 192 IPR004330 -
Trre12g00761 783 Pfam FAR1 DNA-binding domain 239 327 IPR004330 -
Trre12g00761 783 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 80 210 IPR031052 GO:0006355
Trre12g00761 783 Pfam MULE transposase domain 448 541 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00761 Trre-Chr12 6659920 6662271 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre12g00761 MULE 3.6e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00761 K17604 - tpra:123911704 1505.35