Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00755 ATGCTTCTTGTTGTATTGGAGTTTAAGGTTTATGTTTACAATTTCAAGGATTTCAAGGTTATTCGTCAGGTGGATACATTCAGAAACCCTAAGGGGCTTTGTGTTGTTTCTCAGCTTGCTGATTCAACGGTGCTGGTGTGTCATGGATTGCAGAAAGGTCAGGTTCGTGTGGATCACTATGCGAAGAAGAAGATCAATTATGGTTGGGCTCATGATTTGAGTTTGGCGTGTTTTGGTCTCATGATTGATGGAAAGCTCATTCGTGTTTTCGATACGGAGAATGGCTTGTTTCCGAACCGTATCCCCAATCGTGAGGACAAGACAACAATGAAAACTATAACCAAGGTTGTCCTTGATAACAAAGTTTATCTTGGAATCGTCTTTGATATCGATGTGGACAGATCTGCTGCTGTGGATTCTACTGGTTGTGAATTCAACCGGAATCGTTTGATTGGCTTAATGGCAGTTATTGTTCTTGAGGAAATGATTCTGCACCCGAGTAGGAAAGAAAGAAGACGAAAAAAATCGGATAATTCTGCACCCGAGTCAACTTCTTCGCAATCTGATGATTCGGATAGAAGCCGGAGAAGTGGTCACCGGAGTGACCGGAGGTCACGGAGGCGGAGGAGCCGGCATGAATCGGATTCTGAAAGTTCTTCAGATGACAGTGGTAGTGATAGGGATGGAAGGAAGAGAAAATCGTCCAGGAAAATTACTGAAGAGGAAGTAGCACAGTACTTGGCTAAGAAGGCACAGAGAAAGGCATTGAAAGTTGCAAAGAAATTGAAGACTAATATTGTGTCGGGATATTCGAATGATTCAAACCCATTTGGTGATTCCAATCTTAATGAGAATCTTGCTGTTGTGGAGGTTAACAAGGCGACTGTTGGAGCTTTTCCAGGGGCAATTGAAGCTCTGGTGGCGATTCTTCGTGATGGGAAGGGCAGAGAGAGGAAAGAAGCTGCTACCGCGCTTTACGCGCTTTGCTGTTTTTGTGATAATCGGAAAAGGGCGGTGGATTGTGGCGTGGTGCCGATTTTGCTGAGGAGTGTTGAATGTGGACTTGAAAGAGGTGTTGAGGTTATTGGTCTTTTGGTTAAGTGTAAGGAAGGTAGAGAACAATTGGAAAGTTATGGTGGGTGTGTGAAGATTCTTGTTCATGTGTTGAGGAATGGAAGCTCTAGAAGCATAAATGAGAGAAAAGCCACATCTAGGTGTATCAAATTCCCCCTCATAATAGCAAGTCATAGTGCTCCAACAAGGAACTGA 1269 0.4358 MLLVVLEFKVYVYNFKDFKVIRQVDTFRNPKGLCVVSQLADSTVLVCHGLQKGQVRVDHYAKKKINYGWAHDLSLACFGLMIDGKLIRVFDTENGLFPNRIPNREDKTTMKTITKVVLDNKVYLGIVFDIDVDRSAAVDSTGCEFNRNRLIGLMAVIVLEEMILHPSRKERRRKKSDNSAPESTSSQSDDSDRSRRSGHRSDRRSRRRRSRHESDSESSSDDSGSDRDGRKRKSSRKITEEEVAQYLAKKAQRKALKVAKKLKTNIVSGYSNDSNPFGDSNLNENLAVVEVNKATVGAFPGAIEALVAILRDGKGRERKEAATALYALCCFCDNRKRAVDCGVVPILLRSVECGLERGVEVIGLLVKCKEGREQLESYGGCVKILVHVLRNGSSRSINERKATSRCIKFPLIIASHSAPTRN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00755 422 MobiDBLite consensus disorder prediction 208 239 - -
Trre12g00755 422 Gene3D - 85 142 - -
Trre12g00755 422 SUPERFAMILY ARM repeat 301 392 IPR016024 -
Trre12g00755 422 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 85 142 IPR005845 GO:0005975
Trre12g00755 422 PANTHER PHOSPHOHEXOSE MUTASE 88 161 - -
Trre12g00755 422 SUPERFAMILY Phosphoglucomutase, first 3 domains 82 142 IPR016055 GO:0005975|GO:0016868
Trre12g00755 422 Gene3D - 143 161 - -
Trre12g00755 422 Gene3D - 239 415 IPR011989 -
Trre12g00755 422 MobiDBLite consensus disorder prediction 168 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00755 Trre-Chr12 6513797 6516939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00755 280 398 U-box Gene Family AT4G21350 62.185 2.75e-42 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00755 - - gmx:100785141 181.8