Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00752 ATGGACGAAGGACAATCCAAAGCTCATACAAACACATTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAGTGGAATTGTTTCTGTCAAAGGAGATGTCTACAGCTATGGCATTATGCTGATGGAAATCTTCACAAGAAGAAAGCCAACAGATGATATGTTTGTTGCAGAAGTAAGTTTGAAAACATGGATCAGTCGATCGTTGCCTAATTCAATTATGGATGTCCTGGATTCTAATTTAGTCCAACAGAATGGAGAACAAATTGATGACATATTAACTTACATGTCATCTATTTTTGGTTTAGCCTTGAATTGTTGTGAAGATTCACCTGAAGCAAGAATTAATATGGTAGATGTTACTGCATCGCTAATCAAAATCAAGACTTTGGTTCTTGGCATAGATAGGATCTAG 417 0.3693 MDEGQSKAHTNTLATIGYLAPEYGSSGIVSVKGDVYSYGIMLMEIFTRRKPTDDMFVAEVSLKTWISRSLPNSIMDVLDSNLVQQNGEQIDDILTYMSSIFGLALNCCEDSPEARINMVDVTASLIKIKTLVLGIDRI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00752 138 Gene3D Transferase(Phosphotransferase) domain 1 1 130 - -
Trre12g00752 138 SUPERFAMILY Protein kinase-like (PK-like) 7 129 IPR011009 -
Trre12g00752 138 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 1 126 - -
Trre12g00752 138 ProSiteProfiles Protein kinase domain profile. 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00752 138 Pfam Protein tyrosine and serine/threonine kinase 4 123 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00752 Trre-Chr12 6491258 6491958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00752 14 129 Receptor kinase-like Gene Family AT3G47570 37.069 3.68e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre12g00752 PK_Tyr_Ser-Thr 1.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00752 - K13420 tpra:123895879 239.58