Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00721 ATGTGGGTATGTTCTGGTGTTCTTATTAGGTTATTTGTCTTCAAAGTTCTTGGCTTTTCTCATACCCATGTTGCCGATATTATCAAGATTTCATTTTCCATCCTCAACATGTTCTTCTTTGCTTTCCTTGCCAAGATTTCTCATGGTGGTGCCTACAATCCTCTCACTGTTTTTTCTGATGCTATCTCCGGGGATTTTCTTAACTTCCTTTACTGTCTTGGGTCTAGAATTCCTGCTCAGGTGTTTGGATCAATTGTTGGAGTTAGATTTCTTATTGAGACCATTCCTGAAGTAGGACAAGGACCGCGTTTGAATGTTGACATTCATCGGGGAGCATTGACAGAAGGATTACTAACATTTGCAATTGTAAGCATTTCACTTGGGCTTGCTGCATCAAAAATCCGTGGAAGTTTCTTCATGAAGACTTGGATTTCTAGCCTCTCCAAGTTAACACTTAATATACTTGGTTCTGATCTCACCGGTGGTGTTATGAACCCCGCATCTGTAATGGGATGGGCTTATGCTCGTGGCGATCACATAACAAAGGAGCACTTCCTTGTATACTGGCTTGCCCCTATAGAGGCAACTATTTTTGCAGTGTGGACATTCAAATTCTTTGTCCGGCCGGTAATAGAAGGTAAAACAACAGGCTCAAAAAGTAAATCAGATTGA 672 0.4107 MWVCSGVLIRLFVFKVLGFSHTHVADIIKISFSILNMFFFAFLAKISHGGAYNPLTVFSDAISGDFLNFLYCLGSRIPAQVFGSIVGVRFLIETIPEVGQGPRLNVDIHRGALTEGLLTFAIVSISLGLAASKIRGSFFMKTWISSLSKLTLNILGSDLTGGVMNPASVMGWAYARGDHITKEHFLVYWLAPIEATIFAVWTFKFFVRPVIEGKTTGSKSKSD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00721 223 Pfam Major intrinsic protein 42 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g00721 223 Gene3D Glycerol uptake facilitator protein. 3 215 IPR023271 -
Trre12g00721 223 SUPERFAMILY Aquaporin-like 11 212 IPR023271 -
Trre12g00721 223 PRINTS Major intrinsic protein family signature 146 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g00721 223 PRINTS Major intrinsic protein family signature 114 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g00721 223 PRINTS Major intrinsic protein family signature 186 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g00721 223 PRINTS Major intrinsic protein family signature 5 29 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g00721 223 PANTHER AQUAPORIN SIP2-1-RELATED 1 223 IPR044226 GO:0015267
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00721 Trre-Chr12 6237252 6242965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00721 1 223 Major Intrinsic Protein MIP AT3G56950 57.143 5.65e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00721 K09875 - gmx:100786138 348.977