Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00720 ATGGAACGACGTAATAGGTTGGTTTTTATATCAGATTTTGTTCTATCTTTCATGTGGGTATGTTCTGGTGTTCTTATTAGGTTATTTGTCTTCAAAGTTCTTGGCTTTTCTCATACCCATGTTGCCGATATTATCAAGATTTCATTTTCCATCCTCAACATGTTCTTCTTTGCTTTCCTTGCCAAGATTTCTCATGGTGGTGCCTACAATCCTCTCACTGTTTTTTCTGATGCTATCTCCGGGGATTTTCTTAACTTCCTTTACTGTCTTGGGTCTAGAATTCCTGCTCAGGTGTTTGGATCAATTGTTGGAGTTAGATTTCTTATTGAGACCATTCCTGAAGTAGGACAAGGACCGCGTTTGAATGTTGACATTCATCGGGGAGCATTGACAGAAGGATTACTAACATTTGCAATTGTAAGCATTTCACTTGGGCTTGCTGCATCAAAAATCCGTGGAAGTTTCTTCATGAAGACTTGGATTTCTAGCCTCTCCAAGTTAACACTTAATATACTTGGTTCTGATCTCACCGGTGGTGTTATGAACCCCGCATCTGTAATGGGATGGGCTTATGCTCGTGGCGATCACATAACAAAGGAGCACTTCCTTGTATACTGGCTTGCCCCTATAGAGGCAACTATTTTTGCAGTGTGGACATTCAAATTCTTTGTCCGGCCGGTAATAGAAGGTAAAACAACAGGCTCAAAAAGTAAATCAGATTGA 723 0.4039 MERRNRLVFISDFVLSFMWVCSGVLIRLFVFKVLGFSHTHVADIIKISFSILNMFFFAFLAKISHGGAYNPLTVFSDAISGDFLNFLYCLGSRIPAQVFGSIVGVRFLIETIPEVGQGPRLNVDIHRGALTEGLLTFAIVSISLGLAASKIRGSFFMKTWISSLSKLTLNILGSDLTGGVMNPASVMGWAYARGDHITKEHFLVYWLAPIEATIFAVWTFKFFVRPVIEGKTTGSKSKSD 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00720 240 Gene3D Glycerol uptake facilitator protein. 4 232 IPR023271 -
Trre12g00720 240 PRINTS Major intrinsic protein family signature 203 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g00720 240 PRINTS Major intrinsic protein family signature 163 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g00720 240 PRINTS Major intrinsic protein family signature 89 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g00720 240 PRINTS Major intrinsic protein family signature 131 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g00720 240 PRINTS Major intrinsic protein family signature 7 26 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g00720 240 SUPERFAMILY Aquaporin-like 8 229 IPR023271 -
Trre12g00720 240 PANTHER AQUAPORIN SIP2-1-RELATED 7 240 IPR044226 GO:0015267
Trre12g00720 240 Pfam Major intrinsic protein 9 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00720 Trre-Chr12 6237201 6242965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00720 10 240 Major Intrinsic Protein MIP AT3G56950 57.328 2.67e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00720 K09875 - gmx:100786138 363.614