Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00710 ATGAACAAGAGGTCATTCAAGTATGCCTGGGTTCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGTATCACCATCGATATTGCTTTGTGGAAATTTGAAACCACAAAGTACTACTGCACAGTCATTGATGCTCCCGGACATCGTGATTTCATCAAGAACATGATTACTGGAACCTCCCAGGCTGATTGTGCTGTCCTTATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCCGTGAGCATGCTCTTCTTGCTTTCACCCTTGGAGTGAAGCAGATGATCTGTTGTTGTAACAAGATGGACGCCACCACCCCTAAGTACTCCAAGGCTAGGTACGATGAAATCGTGAAGGAAGTTTCTTCCTACTTGAAGAAGGTCGGTTACAACCCTGACAAAATTCCATTTGTTCCAATCTCCGGTTTTGAGGGAGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACCCTCCTTGAAGCTCTTGACCAGATCAATGAGCCCAAGAGACCCACAGACAAGCCACTCAGGCTTCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGAACTGTGCCAGTCGGTCGTGTTGAAACCGGTGTTGTGAAGCCCGGTATGGTTGTCACTTTCGGTCCCACTGGGTTGACAACTGAAGTTAAGTCTGTTGAGATGCACCACGAGGCTCTCACTGAAGCTCTTCCTGGAGACAATGTCGGTTTCAATGTTAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTTGTTGCATCCAACTCCAAGGATGATCCTGCTAAGGAAGCTGCCAACTTCACATCCCAAGTCATCATCATGAACCACCCTGGACAGATCGGTAACGGTTATGCACCAGTGCTCGATTGCCACACCTCTCACATTGCTGTGAAGTTTGCTGAACTTGTCACCAAGATCGACAGACGATCTGGTAAGGAGATTGAGAAGGAGCCCAAGTTTTTGAAAAATGGTGATGCTGGTATCATTAAGATGATTCCCACCAAGCCCATGGTGGTTGAGACTTTCTCTGAATACCCTCCTCTTGGTCGTTTTGCTGTCAGAGATATGCGTCAAACTGTTGCTGTTGGAGTCATCAAGGGTGTGGAGAAGAAAGACCCAACTGGAGCCAAAGTCACCAAGGCTGCTGCAAAGAAGAAGTGA 1200 0.4708 MNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMVVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTGAKVTKAAAKKK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00710 399 Gene3D Translation factors 181 268 - -
Trre12g00710 399 PANTHER TRANSLATION FACTOR 1 385 - -
Trre12g00710 399 SUPERFAMILY Translation proteins 183 273 IPR009000 -
Trre12g00710 399 Pfam Elongation factor Tu GTP binding domain 9 174 IPR000795 GO:0003924|GO:0005525
Trre12g00710 399 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 278 381 IPR009001 -
Trre12g00710 399 Gene3D Translation factors 275 382 - -
Trre12g00710 399 CDD EF1_alpha 1 179 - -
Trre12g00710 399 Pfam Elongation factor Tu C-terminal domain 273 381 IPR004160 -
Trre12g00710 399 CDD EF1_alpha_II 182 272 - -
Trre12g00710 399 NCBIfam translation elongation factor EF-1 subunit alpha 3 384 IPR004539 GO:0003746|GO:0005525|GO:0006414
Trre12g00710 399 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 182 IPR000795 GO:0003924|GO:0005525
Trre12g00710 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 201 IPR027417 -
Trre12g00710 399 FunFam Elongation factor 1-alpha 275 382 - -
Trre12g00710 399 CDD EF1_alpha_III 275 378 - -
Trre12g00710 399 FunFam Elongation factor 1-alpha 181 268 - -
Trre12g00710 399 PRINTS GTP-binding elongation factor signature 100 109 IPR000795 GO:0003924|GO:0005525
Trre12g00710 399 PRINTS GTP-binding elongation factor signature 40 50 IPR000795 GO:0003924|GO:0005525
Trre12g00710 399 PRINTS GTP-binding elongation factor signature 56 67 IPR000795 GO:0003924|GO:0005525
Trre12g00710 399 PRINTS GTP-binding elongation factor signature 20 28 IPR000795 GO:0003924|GO:0005525
Trre12g00710 399 FunFam Elongation factor 1-alpha 1 178 - -
Trre12g00710 399 Pfam Elongation factor Tu domain 2 200 265 IPR004161 GO:0005525
Trre12g00710 399 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 13 28 IPR031157 -
Trre12g00710 399 Gene3D - 1 178 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00710 Trre-Chr12 6147978 6149270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00710 1 392 Eukaryotic Initiation Factors Gene Family AT5G60390 95.663 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00710 K03231 - gmx:100785429 778.474