Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00704 ATGAAGAATTCTGGAAAAGAGTTTGGATTACCATTGAATCTTGACATTAAGAACAAGCTTTCTCTTCAATCTAATGCCTCCAAAGGTCCACCATCCCCCAAGCAACCTTTCTTCATTGGTGTTGCTGGTGGAACTGCATCTGGAAAAACAACTGTGTGCAACCTAATAAATACTCAGCTTCATGATCAACGTATTGTCCTCATTAATCAAGACTCATTTTATCACTCATTGAGTGACAAGACCTTACAAAAAGTTAATGACTACAATTTTGATCATCCTGATGCATTTGATACGGAGCTTATGCTTTCTAGTATGGAGAAATTAAAACATGGGCAAGCTGTTAACATACCAAATTATGATATCAATAGTCGTAAGAGAATTGAACCTCCACGTCAGGTTCACCCTGCAGATATCATAGTTTTAGAAGGGATACTTGTTCTTCATGATTCTCGTGTTCGCGATCTTTTGAACATGAAGATCTTTGTTGATGAAGATTCTGATATACGCCTTGCACGAAGGATTCAACGTCTCGCTATTGAACGTGGGAGGAACATCCAAAATGTTCTAGACCAATATTGCAGATTTGTAAAGCCTAGTTTTGAAGATTTTGTACTTCCAACAAAAAAATATGCTGATATTATCATCCCTGGTGGAGGAGATAATGATGTTGCCATTGACTTGATCATACAAAATATCCGTACAAAGCTTGGTCAACATGATTTGTGTAAAATATATCCAAATATTTTTATCATTTTTTCTACATTTCAGATAAAGGGAATGCATACTCTCATTCGTGATGTTGGAACTACAAAGCATGATTTTGTTTTTTATTCAGATCGCCTTATTAGACTGGTTGTTGAACATGGACTTGGCCACCTTCCTTTTACAGAAAAACAAGTCACAACACCAACAGGATCTGTATACTCTGGTGTGGTTTTCTGCAGCAGACTATGTGGAGTGTCAATTATTAGAAGTGGAGAAAGCATGGAGAATGCATTAAGAGCATGTTGTAAAGGAATCAAAATTGGTAAAATTCTTATTCATGGACATGGCACAAATGGTAGACAGTTAATATATGAGAAGCTACCATCAGATATTGCAAGTCGTCATGTGTTGCTACTTGATCCTGTTCTTGCTACAGGAAATTCTGCGATAAAAGCCATCTCTCTGCTTTTGAAGAAGGGCGTACCAGAATCCAACATAGTCTTTCTAAATTTAATAGCATCACCACAAGGAATAAATGCAGTTTTTGAGAGATTTCCAATGCTAAAACTTGTCACGTCAGAGATTGATGCAACACTAAATGAGAATTCTCGTGTGATTCCTGGCTTAGGGGAGTTTGGTGATCGCTACTTTGCCACGGATGATTAG 1371 0.3735 MKNSGKEFGLPLNLDIKNKLSLQSNASKGPPSPKQPFFIGVAGGTASGKTTVCNLINTQLHDQRIVLINQDSFYHSLSDKTLQKVNDYNFDHPDAFDTELMLSSMEKLKHGQAVNIPNYDINSRKRIEPPRQVHPADIIVLEGILVLHDSRVRDLLNMKIFVDEDSDIRLARRIQRLAIERGRNIQNVLDQYCRFVKPSFEDFVLPTKKYADIIIPGGGDNDVAIDLIIQNIRTKLGQHDLCKIYPNIFIIFSTFQIKGMHTLIRDVGTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVVFCSRLCGVSIIRSGESMENALRACCKGIKIGKILIHGHGTNGRQLIYEKLPSDIASRHVLLLDPVLATGNSAIKAISLLLKKGVPESNIVFLNLIASPQGINAVFERFPMLKLVTSEIDATLNENSRVIPGLGEFGDRYFATDD 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00704 456 CDD UMPK 38 235 IPR000764 -
Trre12g00704 456 PANTHER URIDINE KINASE 32 365 - -
Trre12g00704 456 Gene3D - 239 454 IPR029057 -
Trre12g00704 456 Gene3D - 32 238 IPR027417 -
Trre12g00704 456 NCBIfam uridine kinase 37 235 IPR000764 -
Trre12g00704 456 PRINTS Uridine kinase signature 66 77 - -
Trre12g00704 456 PRINTS Uridine kinase signature 111 126 - -
Trre12g00704 456 PRINTS Uridine kinase signature 167 177 - -
Trre12g00704 456 PRINTS Uridine kinase signature 181 192 - -
Trre12g00704 456 PRINTS Uridine kinase signature 36 53 - -
Trre12g00704 456 PRINTS Uridine kinase signature 203 216 - -
Trre12g00704 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 228 IPR027417 -
Trre12g00704 456 Pfam Phosphoribulokinase / Uridine kinase family 38 224 IPR006083 GO:0005524|GO:0016301
Trre12g00704 456 Pfam Uracil phosphoribosyltransferase 253 454 - -
Trre12g00704 456 FunFam Uridine kinase 32 238 - -
Trre12g00704 456 FunFam Uridine kinase 239 454 - -
Trre12g00704 456 SUPERFAMILY PRTase-like 238 454 IPR029057 -
Trre12g00704 456 CDD PRTases_typeI 317 427 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00704 Trre-Chr12 6098297 6103920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00704 35 456 PRT Gene Family AT1G55810 73.759 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00704 K00876 - mof:131168055 692.575