Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00703 ATGTTCACATCAAGGAAGAAAATCAGCAAGGATAAGGGTGCCGAGCCAACTGAATTTGAAGAATCAGTTGGACAGGCTTTGTTTGATCTAGAAAACACCAACCATGAGCTGAAAAGTGAGCTCAAAGATTTATACATAAATTCAGCAGTCCAAATCGATGTTTCTGGCAACCGTAAGGCTGTGCTTATCCAAGTCCCCTACAGATTAAGGAAGGGTTTCCGCAAAATTCATGTCAGGCTTGTTAGGGAGCTTGAGAAGAAATTTAGCGGCAAGGACGTAATCATTATTGCCACCAGGAGGATTGTTCGGCCACCAAAGAAAGGTTCAGCTGCTCAGCGCCCTCGCAGCCGTACACTTACTGCTGTGCACGAAGCAATACTTGAGGATGTCGTATTACCTGCTGAGATTGTTGGCAAGCGCACTCGTTACCGAGTTGATGGATCAAAGATCATGAAGGTGTTTTTGGACCCAAAGGAGCGTAACTCAACCGAGTACAAGTTGGAGACATTTGCTGCAGTTTACAGGAAACTTTCAGGCAAAGATGTCGTGTTTGAGTATCCAATTACTGAGGCTTAG 576 0.4479 MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQIDVSGNRKAVLIQVPYRLRKGFRKIHVRLVRELEKKFSGKDVIIIATRRIVRPPKKGSAAQRPRSRTLTAVHEAILEDVVLPAEIVGKRTRYRVDGSKIMKVFLDPKERNSTEYKLETFAAVYRKLSGKDVVFEYPITEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00703 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre12g00703 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre12g00703 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre12g00703 191 Coils Coil 27 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00703 Trre-Chr12 6090033 6091086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00703 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 79.581 2.28e-115 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00703 K02993 - gmx:100527642 347.436