Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00697 ATGGGTCGTGGAAGAATATCTATGAAACTCATTCAAAATGAGAAATCAAGAAGGACAACATTTCAAAAGAGAAAGAAAGGATTAATCAAAAAAGTGAATGAATTTTCCATTCTTTGTGGTGTTGATGTTTGTGTAATTCTCTATACTCCCAATTTTGAAGGTCAAGGATATGTTGAACCTGAAATATGGCCCGAAGACAAAGGAGAGGTACACAGAATCCTTCAAAAATACTATAACACTACAATTGATAGGCGTCCTAAGATCTATGATATTCAAGAGTATTACAAAGAAAGGGTGAAAAGAGTTGAATTTGAAATTTCCAAAGTGCGCAAAGAGATGTTAAAGACCATGTATCCAACTTGGGATGAGTCTTTCAATTCTCTTGGAGAGGAACAAATGAGGTTATTTGCTGGCATGTTGGATGCTAAGCTTGAAGCTTGTAATCAAAAGATGAATATGCTAAAAGGAGATCTTAAGGGAAAAACAATAGCTCATGAATCATACAAGGTTGATAAACCTAATAATACCTATTTGACCTCAAATTCAAATAACTACTTCAATCTCATGCAAAACATGTCTCAACCAGAAATTTACCCTCCATTGATGAATATTAGTGATAAAACCCCCTTAGGGTTTTGGCCACTCCATTTCGGACAAAGCTCTCAACCTTCTTCAGCGCTTTCTAGTGCACAAGGTTCCTATCAGGTTGAGTCTGATGAGGGTAGATATGCACAGTCTTATCCCTGCAAGCAAGTCGATGCTAATTGGACCAATCAGATTGATGCTAATATTTCCTATGATCCAAAAATAGGTACAAAAAAGAACAATGGAGCTGAAAATTATGAGAATTTTTCACCATATTATTACAATGGAAATGCAATGACAATGCAATCATATCCTATTGGTATGCATACTCTTCCTTTTCAGAATCTTCCAAACCTACCACCACATGGATATCAATTTAATGGATTCTTTGATATGGATATTCATCAAGCTCATATGTTCAACAACTACATGGATGGAAGGAAGTAG 1032 0.3556 MGRGRISMKLIQNEKSRRTTFQKRKKGLIKKVNEFSILCGVDVCVILYTPNFEGQGYVEPEIWPEDKGEVHRILQKYYNTTIDRRPKIYDIQEYYKERVKRVEFEISKVRKEMLKTMYPTWDESFNSLGEEQMRLFAGMLDAKLEACNQKMNMLKGDLKGKTIAHESYKVDKPNNTYLTSNSNNYFNLMQNMSQPEIYPPLMNISDKTPLGFWPLHFGQSSQPSSALSSAQGSYQVESDEGRYAQSYPCKQVDANWTNQIDANISYDPKIGTKKNNGAENYENFSPYYYNGNAMTMQSYPIGMHTLPFQNLPNLPPHGYQFNGFFDMDIHQAHMFNNYMDGRK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00697 343 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre12g00697 343 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Trre12g00697 343 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Trre12g00697 343 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 184 - -
Trre12g00697 343 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre12g00697 343 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Trre12g00697 343 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre12g00697 343 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre12g00697 343 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre12g00697 343 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00697 Trre-Chr12 6018635 6019666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00697 1 126 Type I MADS-box Gene Family AT5G55690 45.669 1.15e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre12g00697 SRF-TF 9.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00697 - - tpra:123913303 542.732