Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00676 ATGCGAATGAGTTGTAATGGTTGTAGAGTTTTAAGAAAAGGGTGTAGTGAAGATTGTAGCATAAGACCATGTTTGGAATGGATTAAGTGTCCTCAATCACAAGCTAATGCAACTCTTTTTCTTGCTAAGTTTTATGGTCGTGCTGGTCTCATCAATCTCATCAATTCTGCCTCTCAAAATCATCGTCCAGCAATTTTTCGATCATTGCTACATGAGGCTTGTGGGAGGATCGTGAACCCGGTTTACGGTTCAGTGGGTCTTCTATGGTCTGGTAGCTGGCAGCTCTGTCAAGCCGCTGTTGAAGCCGTGTTAAAAGGTGAGCCGATTACGCCAATAGCTTCGGAGGCTACACATGGCCCACCTTTCAAGGCATATGACATACGCCATGTGGCGAAAAATGATAACTTGGATGAGACTCAAAGGGTCAAGACTCGGTCTCGATTCAAACGAGCCGTGAAGCCAAAGCCAAGTATGGAAAATGGTTCAGTTGAAGAGGCGAACCAGCTGTCTGAATCATTGCTTAGCCAACCGGGCAAAGATAGTGAGAGTGGGGTTTTGGTGGAAACTTCGATTCTTTTTCATGATGAACCGGAGTCGAAAGCTAAGATAAGTGGTCAAGCCGAGGATGGTGTGAGTAATGAGGTTGGTTTGGAGCTTAGGCTTGGGTTCGAACCCATTGATTCGCGTGAGCCATGTGAGGTGCACGTGGTTCCCATAAAGAAGAGAAAATTTGATTTGAAGGATCATAATGTTTCTTGCAAAGTGGAGCTTGGGCTTGAGTTTGCGGCTTAA 792 0.4533 MRMSCNGCRVLRKGCSEDCSIRPCLEWIKCPQSQANATLFLAKFYGRAGLINLINSASQNHRPAIFRSLLHEACGRIVNPVYGSVGLLWSGSWQLCQAAVEAVLKGEPITPIASEATHGPPFKAYDIRHVAKNDNLDETQRVKTRSRFKRAVKPKPSMENGSVEEANQLSESLLSQPGKDSESGVLVETSILFHDEPESKAKISGQAEDGVSNEVGLELRLGFEPIDSREPCEVHVVPIKKRKFDLKDHNVSCKVELGLEFAA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00676 263 MobiDBLite consensus disorder prediction 146 181 - -
Trre12g00676 263 MobiDBLite consensus disorder prediction 161 181 - -
Trre12g00676 263 PIRSF AS2 1 152 IPR017414 -
Trre12g00676 263 PIRSF AS2 140 263 IPR017414 -
Trre12g00676 263 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Trre12g00676 263 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 219 - -
Trre12g00676 263 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00676 Trre-Chr12 5812612 5814055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00676 1 259 AS2 family AT3G02550 51.071 3.07e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre12g00676 LOB 5.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00676 - - aprc:113867933 334.724