Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00656 ATGGAACTCGATTCATCTTCACTACATCGCAGTCAGAGCAAGGTTGATGCCAATGGAAACCAAGTGAGTCGTAACAATGCACGCGGAATTCGTGTTATTGGTAACAGAATCTATGATTCTGAAAATGGCAAAACTTGTCATCAGTGCCGGCAAAAAACAAGGGATTTTTCTGCAGGATGTAAGAATCCAAGAGATGGGAAGCCTTGTCTTATTAGGTTCTGCCACAAATGCCTCTTGAATAGATATGGGGAAAAGGCAGAAGAGGTAGATCTATTGAATGATTGGAATTGTCCAAAGTGCAAAGGCATTTGCAACTGCAGTGCTTGCATGAAAAAAAGAGGCCAACAACCTACTGGTTTACTAGTTCGTACTGCCAAGGCATCCGGTTTTAACTCTGTGTCAGAAATGCTTAGCAAGAAGGCTTCTGCAGATTTGGTATCGAACAATGCTGCAGTTTTGCCTATTAAGGAAGCTACTTCGGAAAAGGTGCTTGTGGTGGGTCTATCAGGGGAACAAGGGAAGGAAAACTCAATGGGTGGAAAAAAAGGTTTAAAGGTTGAAAATGAGAAAACCAAGAAAATGAAGCGGGAAAAGCTAAAGGAAATATCTAATTGTAACAATGTTGATGATGCTCCCCAAAACAAGAAATTGAAAATGTCTAAACTTTGTAATGGAGCTTCAGATGGTGAATTGAAAAGAAACGCAAAGGCTGAAATGGAAACAAAAGTAGACGAGAATCATGGTATGATTTGTGGTCCAATGGATGGTCCTGTTGCGATGGATGATGGTGAAAATGCTAGTGCCAAGTCTCAAACAAATGCTATAGTTTTGCATGCTCAAAAAATTAAGGAAGAGACTCCTTTGCCTCCTGGCACTGAGATGACAAAGATATTAGACATTGAGTTTGCACCAGAAGATGTTGGGAATGCGTTACAGTTTTTAGAATTCTGTAGAGTGTTTGGAAAGGCTCTTGATGTCAAGAAAGGAGAAGCTGGAGCTATTTTAAGAGCATTGGTACGTAAGCAAAATCTGCGACGTGGACAAAATACTTTAGTGGTTGAGTTCCAAATCAAGTTGTTGAATTTGATACTATCTGAATCAGAAACTGAGTCTTCATCCTTAACTGCTAGCAATGGAAAAAATTCATGGTTGAAAGTTTTAGAGGATTTAATTACTGAATCTGATCTTGGACTAAAAGAGTTTGCGTTGGATTGGCTTAATAAAGGCATTAGCGGATATAATGATTTGGAAATATCTAAAAAGCTTATCCTTCTGAATTTTATCTGTGATGAAGCTCTGGGCACAATGAAGCTAAGGAGTTATATTCATGACCAAAATGCAAAAATTGCTGAAGAAAAGAAAGCAGCAAAATCTAAGGTTGCTGAAGCTAAGGAAAAGGAAAGAAGTCTTAAGCAACAACTGCAGGATGAGATGGCAAAAGCTATTGTATCAAATGGGACTAGCCTCTCAATTTCAGAATATGATGCTCTTGTTTCAAAAATTAAAAGTGAAGCAGCTAAAGCTCATACCGAGTTGCTTGAGGCAAAGGGCACAATTCCTAAACGGAATCAATGTTGTGATGCAGTGAGAATTGAGCCGGAGTTCTTGGATAGCAGTGGTAAAGCATTCTGGAAATTAAGAAGCTGTAATGATGAATATGCTTTCTTGTTACAAGACCTGAAGATCCATGATGAAGATGCTGTCGAAGTTGATGAGAAATGGTTTGTTTATGGAGCTGAGCAGAAGGATGAGGTTAATAAGTACATTTCCTCTAGGAGAGATTGTTTACCAATGCTTACTTCAGTATAA 1809 0.3881 MELDSSSLHRSQSKVDANGNQVSRNNARGIRVIGNRIYDSENGKTCHQCRQKTRDFSAGCKNPRDGKPCLIRFCHKCLLNRYGEKAEEVDLLNDWNCPKCKGICNCSACMKKRGQQPTGLLVRTAKASGFNSVSEMLSKKASADLVSNNAAVLPIKEATSEKVLVVGLSGEQGKENSMGGKKGLKVENEKTKKMKREKLKEISNCNNVDDAPQNKKLKMSKLCNGASDGELKRNAKAEMETKVDENHGMICGPMDGPVAMDDGENASAKSQTNAIVLHAQKIKEETPLPPGTEMTKILDIEFAPEDVGNALQFLEFCRVFGKALDVKKGEAGAILRALVRKQNLRRGQNTLVVEFQIKLLNLILSESETESSSLTASNGKNSWLKVLEDLITESDLGLKEFALDWLNKGISGYNDLEISKKLILLNFICDEALGTMKLRSYIHDQNAKIAEEKKAAKSKVAEAKEKERSLKQQLQDEMAKAIVSNGTSLSISEYDALVSKIKSEAAKAHTELLEAKGTIPKRNQCCDAVRIEPEFLDSSGKAFWKLRSCNDEYAFLLQDLKIHDEDAVEVDEKWFVYGAEQKDEVNKYISSRRDCLPMLTSV 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00656 602 Pfam DDT domain 305 365 IPR018501 -
Trre12g00656 602 Coils Coil 446 480 - -
Trre12g00656 602 ProSiteProfiles DDT domain profile. 304 369 IPR018501 -
Trre12g00656 602 SMART testlast3 304 369 IPR018501 -
Trre12g00656 602 MobiDBLite consensus disorder prediction 10 24 - -
Trre12g00656 602 PANTHER OS05G0300700 PROTEIN 17 529 IPR040221 GO:0006355
Trre12g00656 602 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 38 137 IPR018866 -
Trre12g00656 602 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00656 Trre-Chr12 5607408 5612097 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre12g00656 zf-4CXXC_R1 3.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00656 - - mtr:25495611 901.353