Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00649 ATGCAGCCTTGCAGCAGAGAAATGCAATCCCTCTTCAACTCTTCTTCCCAAATTCCCATCCCTCTTCAAAATCACTCACATATACAAATCAACAACAACAACAACAATGATGCATTCCACAACGACGATTTCCTCAAACAAATGCTCTCCAATCTCCCTCCATCCTCTCCTTGGACTCTTGACCCTAATTCTGACGAAAATGTCACTTTCCCTAATTACGATCAACAACACAACAACCTTTCCTCCAAGTTTCGTAACCAACACATCACTCACAAGTCCGCCGCCGTGACCTTTCTTCACATGCCTGCTGACTTTGACTCCTCTCAAAACGATGTCGTTAACACTTCCTCCGCTGATGACGCTTCCGTTCAAGCTCTCTTTAATGGTTTTTCCGGATCTCTCAACGGTGTCGCCGGCAATCAAACTCATCATTTTCAACCTCCTCAGGGGCAAAGTTTTGGAGGTGGTTCAGTGAGTGCGACGAACCAGGCTCCGGCGAGTGGTGCTCCGGCACAGCCAAGGCAGAAAGTCAGGGCTAGGAGAGGCCAAGCAACCGACCCACACAGCATTGCTGAGAGGATGCGGAGAGAAAGAATTGCGGAGAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATATGAAGTTCCTACAGGTTCAAGTCAAGGTTTTGAGCATGAGCAGATTAGGTGGAGCAGCAGCTGTAGCTCCCCTTGTTGCTGATATGTCCTCCGAGGGTGTAAGTGACTACGCCGAAGCCAACGGCAACGGTGGGGTCCACCCTAGAAACCCAAAAATGGCGTCGTCTTCAAACGGAAGCCTCACAATGACAGAGCATCAGGTGGCAAAGCTGATGGAAGAAGATATGGGATCCGCCATGCAATACTTGCAAGGCAAAGGTCTATGCCTCATGCCTATTTCTCTTGCAACTGCAATATCTACAGCCACGTGTCACACCAAGAACCCTTTGATCAATGCTGCCAATAACAATGTCAACAACGGTAATGGGAACCATGTCGTTGCATCTAACGGTGATGGGCCATCCTCTCCTGGAATGTCCGTTAATAGCATCGTCAAAGATGCTAACTCCGCTTCTAAGTCCTAG 1149 0.483 MQPCSREMQSLFNSSSQIPIPLQNHSHIQINNNNNNDAFHNDDFLKQMLSNLPPSSPWTLDPNSDENVTFPNYDQQHNNLSSKFRNQHITHKSAAVTFLHMPADFDSSQNDVVNTSSADDASVQALFNGFSGSLNGVAGNQTHHFQPPQGQSFGGGSVSATNQAPASGAPAQPRQKVRARRGQATDPHSIAERMRRERIAERMKALQELVPNANKTDKASMLDEIIDYMKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDYAEANGNGGVHPRNPKMASSSNGSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTKNPLINAANNNVNNGNGNHVVASNGDGPSSPGMSVNSIVKDANSASKS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00649 382 MobiDBLite consensus disorder prediction 138 190 - -
Trre12g00649 382 FunFam Transcription factor bHLH66 180 245 - -
Trre12g00649 382 Pfam Helix-loop-helix DNA-binding domain 188 233 IPR011598 GO:0046983
Trre12g00649 382 MobiDBLite consensus disorder prediction 138 169 - -
Trre12g00649 382 SMART finulus 189 238 IPR011598 GO:0046983
Trre12g00649 382 Gene3D - 178 240 IPR036638 GO:0046983
Trre12g00649 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Trre12g00649 382 MobiDBLite consensus disorder prediction 350 382 - -
Trre12g00649 382 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 327 - -
Trre12g00649 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 243 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00649 Trre-Chr12 5553652 5555853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00649 169 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.667 4.21e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g00649 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00649 - - psat:127138414 530.02