Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre12g00647 | ATGGCAACTCCACCTGTTGTTAGATTTCCGATCTTCGCAACAGTTAGAGCTATTGGAATTGTGATCATTCTTCTTCTCTTAACATGGGCTGTTCATTTCAGAGGAGGACTCGCTCTCATTTCCGATAATAAAGATCTCATCTTTAATGTTCATCCGGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCGTACAAGACGGTACCTGGAACTAAAAGCTTCAAAAAAACAGTTCATCTCGGATTACAGTTTCTTGCTCTCTTTTTGAGCTTAATTGGTCTTTGGGCTGCTTGGAAGTTTCACAATGACAAGGGCATTGACAATTTCTACAGCCTGCATTCATGGTTAGGCCTTGCATGTCTTTTCCTATTCTCCATTCAGTTGGCTGCTGGATTTGCAACATTTTGGTATCCAGGAGGCTCAAGAAACAGTAGAGCTGCACTGATGCCATGGCATGTGTTCTTTGGCATCTATATCTATGCATTGGCTATAGCTACAACTACTACTGGTATTTTAGAAAAGGCTACATTCCTTCAAACCAACAATGTCATATCGCGATATTCGAGTGAAGCAATTCTTGTCAATTGCTTAGGCGTTTTGATTGTTGCTTTAGGTGGCTTTGTTATTCTTGGCTTAGTTACGCCGACTTATAACAAAGCTGATGTTTTAAGAGGAAATGAATGA | 699 | 0.4063 | MATPPVVRFPIFATVRAIGIVIILLLLTWAVHFRGGLALISDNKDLIFNVHPVLMVIGLVLINGEGMLAYKTVPGTKSFKKTVHLGLQFLALFLSLIGLWAAWKFHNDKGIDNFYSLHSWLGLACLFLFSIQLAAGFATFWYPGGSRNSRAALMPWHVFFGIYIYALAIATTTTGILEKATFLQTNNVISRYSSEAILVNCLGVLIVALGGFVILGLVTPTYNKADVLRGNE | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre12g00647 | 232 | Gene3D | - | 1 | 230 | - | - | |
| Trre12g00647 | 232 | ProSiteProfiles | Cytochrome b561 domain profile. | 14 | 218 | IPR006593 | - | |
| Trre12g00647 | 232 | SMART | 561_7 | 50 | 176 | IPR006593 | - | |
| Trre12g00647 | 232 | PANTHER | CYTOCHROME B561-RELATED | 6 | 220 | IPR043205 | GO:0016491 | |
| Trre12g00647 | 232 | CDD | Cyt_b561_ACYB-1_like | 41 | 184 | - | - | |
| Trre12g00647 | 232 | FunFam | Cytochrome b reductase 1 | 5 | 227 | - | - | |
| Trre12g00647 | 232 | Pfam | Eukaryotic cytochrome b561 | 50 | 182 | IPR006593 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre12g00647 | Trre-Chr12 | 5522480 | 5526350 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre12g00647 | 1 | 228 | Chloroplast and Mitochondria Gene Families | AT5G38630 | 72.368 | 2.69e-118 | 335 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre12g00647 | K08360 | - | gmx:100787570 | 391.734 |