Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00646 ATGGATCCTCCTCGTCGAGCACCACGTACAGTAATCGACCCCGTCCCTAAATTCCGTCAAGTCGGATTCTTCGCTCCACCCGACCGTTCACAATCGGGTCCACCCGACCCGACTCACTCATCTCCTCCTATCGCTGACGCATCCGCTTCTCTCTCCCCCGTTATGATTCCTCCGCCGCGTCATCTTTCCGATAACCTAATTCTCCATGCTCGTCAGGCGAATTATCCGCGCCGTGCGGCGGAGTCGATTACTGTTGGTGGAAGTAATTCTGATGCTCCTGTTTCGCCGGCGCCGTCGTCTTCTTATTCGAGTAGGTTTGTTGTTGGTGGTGATAGAGGGTTTTTTGATGGGAAGGGGAAGGATAATGGAAAAGTTGTGGCTTCTTCGTTTCCGAGAGGTGGATTTGATTTGACTGCGTTGAAAGGGAATGCTGCTGCTGCTGCTGTTCCGGCGAGTCAGTTGACTACTGTTTCTGTTGTGAATGATTCGCTTGGGATTCCTGAAAAAGAAAAAACAAGCAAAGGAGGAGGGTCAGCTGGGGAAATGAAAGACCAATCTAGTTCAAAACAGCAGAAACCAAAACCCACGAAAGCTGAAAGACGTGCACTTCAAGAAGCTCAACGAGCTGCAAAGGCTGCTGCAAAAGCGAATGCAAAACCAGCTAAAGCAGTAAAGCCTGCACAGAAAGCTGATACCGCATCAGTTGCAGCCACCGAGAAGAAGGGGGGCGAGTTTCCACCTGAAAAGGATAGAAAGAAAGATGCCCCTCAACCACGCCTGCAGTATGATGACAAGAGCCGGGTGGAGAAAGCTAAACGTCGTTCTGTGGTGAAACAAACTGAGGCTAGGAACAGAGTTGAGTTGTTCAGGCATTTACCACAATATGAGCATGGGAGTCAGCTTCCAGATCTTGAGGCAAAGTTTTTCGATCTTCATCCTGTACATCCTGCTGTTTATAAGGTGGGTTTGCAGTACATATCTGGAGATATATCTGGTGGCAATGATCGTTGTATTGCAATGCTTCAAGCATTTCAGGAGGCAATCAAAGACTACAAGGTTCCACCTGAGAAGAGTCTCGGAAGAGACTTGACAGCAAAAATTGGTAGTTATGTATCATTTCTTAATGAGTGCCGACCTTTGTCAATCAGCATGGGAAATGCAATTAGATTTCTCAAGAGTCAGATAGCCAAGCTACCTTTAACCTTGTCTGAGTCAGAAGCAAAAACTTCTCTCCACTCAGATATTGAACGTTTTATAAGTGAGAAGATCATACTTGCCAACAAGGTGATAGTCAAGCATGCCGTCACCAAAATAAGAGATGGGGATGTTCTTCTAACTTACGGGTCATCATTGGCTGTTGAAAATATTCTTTTACATGCACACGAGTTAGGAAAACAGTTTCGTGTTGTGATAGTTGATTCTCGTCCAAAGCTTAGAGGCCAACAGTTGCTCCGCAGGCTTGTGGAGAAAGGTCTTAACTGTACATACACTCATATAAATGCTGTTTCCTACATTATGCATGAAGTTACTCGAGTTTTTCTGGGTGCTGAATCGATACTATCTAACGGAACGGTATATTCAAGAGTGGGTACTGCAAGTGTTGCGATGGTTGCTCATGCATCCCGTGTACCAGTCATAGTATGTTGTGAGGCCTATAAATTTCATGAAAGGGTACAGCTGGATTCAATTTGCTCGAATGAGCTTGGTGATCCAGATGTCATTTCAAATGTTAAGGGTAGAGTGGATGTCAACCACTTGGATGGTTGGGCCGATATTGAAAATCTGCAACTTCTAAATCTTATATATGATGCAATGCCTTCAGATTACGTCTCAATGATAGTCACGGATTATGGCATGGTTCCCCCAACAAGTGTGCCTGTAATTGTAAGAGAATATGGGAGGGAACATGTCTGGGTATAA 1920 0.4536 MDPPRRAPRTVIDPVPKFRQVGFFAPPDRSQSGPPDPTHSSPPIADASASLSPVMIPPPRHLSDNLILHARQANYPRRAAESITVGGSNSDAPVSPAPSSSYSSRFVVGGDRGFFDGKGKDNGKVVASSFPRGGFDLTALKGNAAAAAVPASQLTTVSVVNDSLGIPEKEKTSKGGGSAGEMKDQSSSKQQKPKPTKAERRALQEAQRAAKAAAKANAKPAKAVKPAQKADTASVAATEKKGGEFPPEKDRKKDAPQPRLQYDDKSRVEKAKRRSVVKQTEARNRVELFRHLPQYEHGSQLPDLEAKFFDLHPVHPAVYKVGLQYISGDISGGNDRCIAMLQAFQEAIKDYKVPPEKSLGRDLTAKIGSYVSFLNECRPLSISMGNAIRFLKSQIAKLPLTLSESEAKTSLHSDIERFISEKIILANKVIVKHAVTKIRDGDVLLTYGSSLAVENILLHAHELGKQFRVVIVDSRPKLRGQQLLRRLVEKGLNCTYTHINAVSYIMHEVTRVFLGAESILSNGTVYSRVGTASVAMVAHASRVPVIVCCEAYKFHERVQLDSICSNELGDPDVISNVKGRVDVNHLDGWADIENLQLLNLIYDAMPSDYVSMIVTDYGMVPPTSVPVIVREYGREHVWV 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00646 639 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 47 636 - -
Trre12g00646 639 MobiDBLite consensus disorder prediction 159 277 - -
Trre12g00646 639 Pfam Initiation factor 2 subunit family 330 622 IPR000649 GO:0044237
Trre12g00646 639 MobiDBLite consensus disorder prediction 242 277 - -
Trre12g00646 639 MobiDBLite consensus disorder prediction 83 103 - -
Trre12g00646 639 Gene3D - 425 632 IPR042529 -
Trre12g00646 639 MobiDBLite consensus disorder prediction 79 103 - -
Trre12g00646 639 MobiDBLite consensus disorder prediction 187 206 - -
Trre12g00646 639 MobiDBLite consensus disorder prediction 1 57 - -
Trre12g00646 639 SUPERFAMILY NagB/RpiA/CoA transferase-like 313 632 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00646 Trre-Chr12 5513074 5519067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00646 5 639 Eukaryotic Initiation Factors Gene Family AT5G38640 63.308 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00646 K03680 - gmx:100775998 956.051