Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00645 ATGTTCCCTTACAGTTCAAACCCTTACCCTTCTTTTCTTCCCTCATCTTCATCATCTTCTTCACTCTTTCCTTTTCCATTCCTCAATCCTGAAAATGCTTCATCAAACAATAATAACAATACCCTTTTTCTTGATCCATTTTCCATTCCTTACATACCAACTCATCATCCTCATAATCATAACATTACAAATATTCCAGAAACCCTAACCAACTTGGCTGTTTCACAAGAAAATAATAATAGTAACAACAATAATAACATTGTGGTTTCAATGCCTAAACAAGATCCTTCAACTCTTGGTGGTTCTAATTCTCACTATGGTATTTCTTGTTTCCTTACAAAGAAACCGGTTAAGAAAGACCGGCATAGTAAGATTTATACTTCTCAAGGTTTGAGAGATCGAAGGGTTAGGCTTTCAATTGAGATCGCTCGAAAGTTCTTCGATCTTCAAGATATGCTAGGGTTTGACAAAGCTAGTAACACACTTGATTGGCTTTTCACTAAATCTAAGAAAGCAATTAAGGATCTAACTAAGAGCAAGCAAAAACACAAAAATAGTGAACGTGTTGATGCTTCTAAAAGCTTCTCATCTTCTTCGGATTGTGAAGATTCCGAAGTTGCTATTAACGATTCTTCAAACCTACAAATGGAGGGTGCAGGAAGTAAAATTGAAGAGAGGAAGTTGAAAAGGGTTCAAATCAAAGAACCAGCTTGTGTTAGGGCTAATAAGATGAAGGAGTCAAGGGAAAAAGCAAGAGCAAGAGCAAGGGAAAGAACTAGCAACAAGATCTCCAACAACAGCATAAGGGGGGTGCAGGAATTAGAATTGAAGAAAAAGTATGAAAATAATCTTCAAGCTTTTCAACAATCAAGATCTTCACAAGATCATCAACTTGTGAGTAGTAGTGAAGGACCGAGAAATTATTTCAATGTTATTGAGGAATCAATTGTGATTAAGAGGAAGCTAAAACCTTCAATGATGGTTTCTCATCATCATAATCATAATCATAATCATCATCATCATCATCATAACCATCAAAATCATGTGATCCCTAAGGAAGCTACAAGTTTCAACAACAATGGTGATTACCATTTCTTGCCTAATTCATCTCCAAATTGGGATGTTAATAATGGTACTTCCTCTACTAATCGCTCCACCTTTTGTGCAATAGCTAGCATGAATCTTTCTGCAGGGCTTCAAATCTTTGGAAAATCATGGGAGGAATGCACCAATCCACGTCTACATTAG 1248 0.363 MFPYSSNPYPSFLPSSSSSSSLFPFPFLNPENASSNNNNNTLFLDPFSIPYIPTHHPHNHNITNIPETLTNLAVSQENNNSNNNNNIVVSMPKQDPSTLGGSNSHYGISCFLTKKPVKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLTKSKQKHKNSERVDASKSFSSSSDCEDSEVAINDSSNLQMEGAGSKIEERKLKRVQIKEPACVRANKMKESREKARARARERTSNKISNNSIRGVQELELKKKYENNLQAFQQSRSSQDHQLVSSSEGPRNYFNVIEESIVIKRKLKPSMMVSHHHNHNHNHHHHHHNHQNHVIPKEATSFNNNGDYHFLPNSSPNWDVNNGTSSTNRSTFCAIASMNLSAGLQIFGKSWEECTNPRLH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00645 415 ProSiteProfiles R domain profile. 245 262 IPR017888 -
Trre12g00645 415 ProSiteProfiles TCP domain profile. 118 176 IPR017887 -
Trre12g00645 415 MobiDBLite consensus disorder prediction 178 221 - -
Trre12g00645 415 MobiDBLite consensus disorder prediction 191 218 - -
Trre12g00645 415 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 80 359 IPR005333 GO:0003700
Trre12g00645 415 Pfam TCP family transcription factor 117 264 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00645 Trre-Chr12 5502324 5504469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00645 55 187 TCP Transcription Factor Family AT1G67260 45.390 5.55e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre12g00645 TCP 1.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00645 - - cam:101499957 496.123