Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00644 ATGCTTGCCAAGGGTTATAATCTTGGTGGGAATACTTGGAGAGAAATTCCAAGAAATGCTTCACCAGCTGTCTCAAACATTCTACGCAAGCGAGGTTTTGATGAATTAGGCAATCAATATGTAGGAAATCCAGTAAGACGCAACACAAACTGGCGATATGATCCTGATATAGCATTCACCCGTGATTGGATAAAAACGAAAATTTTTGAAATAACTAGTCCTGTATTACACAATGAGCAACTTGCTCCTATGCTGGAATTATCTCTATTTACCACTGCTGCTTCAAAGGAGGAATACATGAACATGGAGACGTTGAATCGGCGTGTGCAAGCTCTAATGAATGCTTTTAAGAATTATCCCGTGCCACAAGGGGGACTTTCTGACCGTTCTACTGTTCATGACCCGCCTTGTTTTCCTTATGATAGTTCATCAATCCCCCAACTTGCTGATATGGATGTGCTTTGTAACTTACCTGTTTCTGGTGGTGGAAGCAATCTGGATTCTAACACCAGATCAATAAGCAACTATTTTCCTCAGCAACACACAAATAATTTGGAGATGGATCTGAAAAAATACAGTGATTGTTTGGGGACTATTCAGAATAATGATTCTAAAAGTTTTCCTACTACAAGGGGAATATCCCTCCAATCTGGAGATTTTAATTTTAAGCTCCCTCAACCTTCCTTGGTGAATAATTCAGTATCCCTCCAATCTGAAGATTTTAATTTTAAGCTCCCTCAACCTTCCTTGGTGAATAATTCAGAATTTTCTAATCAGTTTCCTGGCTCGAGGTCTTTCGTAGACTTGGAAGATAAAATGCAATATCAATCACAGAAGTTGCATTTTCAGAAGAATTCCACTTTAAGACATGATGTTAATGATGTCCCTTCCGGCAATACTGAATCCATACTAAGACCTGCGAAAAGACATAAAATGATGGATTCAGGTTTTGGTGTATCTTCAATTAACTATCCAAGTTTTGATCGATGGAATTGCAAGATGGTTCAACCTCATTCTTCTCAAACACTTCTGAAAGTGCAGCAACAGTCAGAATTTCCCCTCTCTTCCATCAGTTATGAGGGCAATGGGGAACAATTTACAAATCCTATGTTTCATTCTACGGGAGTTAGAGGGATAAACAACAATGTGATGGTTGGTACATTTGGACAGACCTTGGAGGAGCCAGGCCTTGAAAGCCATGATGTGATGGATAGCAACAGCTTAAAGGAAATTGTTGTTAACTTGAAATCCAGGATGCCTCTTGACATGGATCCTATTCCTACTGATAGAGAGGATATACAAAGCAGAACTGAATTTGACCAAAGCATTAGATTAAATTCCAGTATGCATAATGCTATTCCTACTGATGGAGAAGATATACAAGAAACGACTGAATTCTGGACAAATGCCAAAAAGAAAGTCAATGAGCTAACAGATGATGAAGAGACGATAACAAAGTCCTCAATTACAACAGTTAGTGAGAAAAGGAACTATATGATTTATGATATTTCTGGACCGAATTGCGAGACTGGAATGATCCCCTCGAAAGGCTTAGAGGCTGGTCAAATGTCCGATGAGCAAGACTCCATATTCTATGGCATGATAGACAGCAAAAACCCGGTGGAAACCGACGACATGCCTACTCCCAGGAGCGAACTTATTATTATTGATGATGATGAAGAGGACATACAAGGCAGAACTGGATTCAACCAAGAGGGGATAAATTCTAACAAGGAATTCATTGAATCAAAAGATGATCATGAGAAGCACACTGAGTCCTCAAATACAACAGTTATTGAGATAAACAACTATGTGGCTGTTGATACACTTGGACAGACTTTCAAGACTGAAAGGTTTCCCTCTAAAGGCTTAGAAGCTAGTCAGATATCAGAGGAGAAACATCTTGAAAGCCATGGTGTGCTACATAGCAGCAAACCAATGGAAATTGACAACGGATCAAATTCCAATATGCATGCTCTGATATGCAAGGTTCCAATTCCTATTGATGTAGAGGACAAACAAGACATAATTGGATTCAACCAGGAGGGCACTGATGCTAAAAAGAAAGTCAGTGAGCCAAAAGCTGGTCAAGAGAAGCAAACAAAATCCTCAAATACAATAGCTGATGCTGTTTCCTTGATTGATTTGTTCACGCCAGATCAAATAAAAGAACATATTAGTAGTCTGACAAAGAAACCTTTTAAGGTTCGAACTGAGGAGGAAAGAGGAATTGATGCAAACACGTGTCAATTATGTGAAGAGAAAAAGCTTTACTTTCAAGCAGTACCGATTCTTTGTTTATGTTGTGGCAGGACCATCAAGAAAAATAGAACATATTTCTTTAGAAAAGAAGAAGAATTTGATGCACAGCGTTGCATTTGCTCTGAGTGTTATAGACGTTCTAAAGCTGCGCATATTATATTCAACGGGATATCTATTTCTAAGCAACATCTTGAGAGAAAGACTAATAATGAATTAATTGAAGAAGCGTGGGTTGAATGCAATAAATGCAAAAGATGGCAGCATCAAGTATGTGCACTCTACAACAACAAAAGAGATTTGGACTGCAATGCCGAGTATATATGTCCTTTCTGCCGCTTAATGGAAATTGAAAATGGAATACGTGTTCCCTTACCAAAGAGTGCTATTTTTGGTGCTAAGGACTTGCCTAAAACCATGCTTAGTGACCACTTAGAGAAAAGACTTTTTGAGCGTCTCAAGCAAGAGAGAGCAGACTGGAATAATGATAAAGGGAAGGAGAATCCTGACAAGGTTTTAGCAGAAGAAAGTCTTTCTATTAGAGAAGTGTTATCTGTCGACAAACAATTGAAAGTGAAGAAGCAGTTTCTGGACATCATTTCAGAGGAGAATTACCCTGCTGAATTCTCTTATAGATCAAGAGTTATTCTTTTGTTTCAACAGATTGAAGGAGTAGATGTATGCATTTTTGCAATGTATGTCCAGGAGTTTGGCTCTGAATGCGCCAATCCGAATCAGCGATGCGTATACATTTCATATCTTGATTCTGTCAAGTATTTTAGACCTGAGAGAAGTGCTGCGGGTGGAGGAGCACTTCGTACCTTCGTATACCATGAGATATTGATTGGATACCTTGATTTTTGTAAGAAGCGCGGTTTCTCAACTTGTTACATATGGGCCTGTCCTCCTTCAAAAAGAGAGGATGATTATATACTATATTGCCACCCCGAAGAGCAAAAGACTCCGCATAATGATAAGCTACGCCGCTGGTATCTTTCAATGCTAAATAGGGCCACTGAAGAAAATATTGTTGTTGGTTTAACCAACCTATATGATCATTTCTTTCTTCCTACTGAAAAATCGAATTCCAAGTTGTCAGCTTCTCGTTTGCCATACTTTGATGGAGACTACTGGTGTAGTTTTGCTATGGTAGCAGCTACGGAGATTGAAAAAGAAAGTAGAGGAGACTATGAAAAGATGTTGAAGAAACAAGTGCCAAATAGAGCTTTAAAGACAATGGGACATGACAATCCTTCCAAAGACACTGCCAAAGACATTCTGGTGATGCAAAGATTGGGCCAACATATACTCGGTACCAGGGTAAATTTCTTAATAGCTCACTTGCAATATTCATGCATGCACTGCCGTGAAGTGATAATCTCTGGGAAGCGATGGTTTTGCACCAAATGCATGAAATTTCAGGAGTGTGAAAGATGCCATAGTTCTGATGTACACACTTCAAAGAATGGCGAGGTGCATACACTTTGTCATGTCATTGTCGATGATATCCCCTCCAACACTAAACATGATGATGATATCATCATTGAGAGTGGATTATTTGATAATAGGAACATCTTTTTGAGTTTCTGCCAGAAGTATCTGTTTCAGTTTGACACACTCCGCCGTGCAAAGTATTCCTCAATGATGATCCTCTACTATCTAAATAATCCTACTCTGGTGACTGTTGGAACATGTAGCATTTGTTGCGCAAACAATTTATTCCAAGAGTGCTGGAAATGTGAGATTTGTCCAGAATGTACCATTTGCTCTGCTTGCTATAAGGATAGAGGTGCTGACTGCCATGAACACAAGTTGACTCATGATGAACAGAAGTCCACTCAAAATGAACACAAGTTGACTCAAAATGAACACAAGTTGACTCAAAATTATTCAACACCTCTATGTCAATCTGGAAATCAGGAATTAAATGAGGAAATGATGGTGAAACTGCTGGATGTTTTGAAGCATGCATCTCAATGTCGCGCAACGAACGCTGAACCATGCTCTTATCCAAACTGTTCTCAAATCAAAAAGCTGTTCTCTCATGCCAGTAGGTGCGAAATACGAGTAAATCAAGGCTGTCAGCTTTGCAAAAAGACATGGTTTATACTAACTGCTCACTCCAGGAATTGTGAAGACTCAGAATGCAGAATACCACGTTGCAGGGATCTGCAGAAGCATGAAGAAATGAGAGCAATACATTCTGCATCTGAGCGTGGAGCTAAAGTTGTTGAAAGCGAAGTTGCAGTCGCTGATTAA 4518 0.3929 MLAKGYNLGGNTWREIPRNASPAVSNILRKRGFDELGNQYVGNPVRRNTNWRYDPDIAFTRDWIKTKIFEITSPVLHNEQLAPMLELSLFTTAASKEEYMNMETLNRRVQALMNAFKNYPVPQGGLSDRSTVHDPPCFPYDSSSIPQLADMDVLCNLPVSGGGSNLDSNTRSISNYFPQQHTNNLEMDLKKYSDCLGTIQNNDSKSFPTTRGISLQSGDFNFKLPQPSLVNNSVSLQSEDFNFKLPQPSLVNNSEFSNQFPGSRSFVDLEDKMQYQSQKLHFQKNSTLRHDVNDVPSGNTESILRPAKRHKMMDSGFGVSSINYPSFDRWNCKMVQPHSSQTLLKVQQQSEFPLSSISYEGNGEQFTNPMFHSTGVRGINNNVMVGTFGQTLEEPGLESHDVMDSNSLKEIVVNLKSRMPLDMDPIPTDREDIQSRTEFDQSIRLNSSMHNAIPTDGEDIQETTEFWTNAKKKVNELTDDEETITKSSITTVSEKRNYMIYDISGPNCETGMIPSKGLEAGQMSDEQDSIFYGMIDSKNPVETDDMPTPRSELIIIDDDEEDIQGRTGFNQEGINSNKEFIESKDDHEKHTESSNTTVIEINNYVAVDTLGQTFKTERFPSKGLEASQISEEKHLESHGVLHSSKPMEIDNGSNSNMHALICKVPIPIDVEDKQDIIGFNQEGTDAKKKVSEPKAGQEKQTKSSNTIADAVSLIDLFTPDQIKEHISSLTKKPFKVRTEEERGIDANTCQLCEEKKLYFQAVPILCLCCGRTIKKNRTYFFRKEEEFDAQRCICSECYRRSKAAHIIFNGISISKQHLERKTNNELIEEAWVECNKCKRWQHQVCALYNNKRDLDCNAEYICPFCRLMEIENGIRVPLPKSAIFGAKDLPKTMLSDHLEKRLFERLKQERADWNNDKGKENPDKVLAEESLSIREVLSVDKQLKVKKQFLDIISEENYPAEFSYRSRVILLFQQIEGVDVCIFAMYVQEFGSECANPNQRCVYISYLDSVKYFRPERSAAGGGALRTFVYHEILIGYLDFCKKRGFSTCYIWACPPSKREDDYILYCHPEEQKTPHNDKLRRWYLSMLNRATEENIVVGLTNLYDHFFLPTEKSNSKLSASRLPYFDGDYWCSFAMVAATEIEKESRGDYEKMLKKQVPNRALKTMGHDNPSKDTAKDILVMQRLGQHILGTRVNFLIAHLQYSCMHCREVIISGKRWFCTKCMKFQECERCHSSDVHTSKNGEVHTLCHVIVDDIPSNTKHDDDIIIESGLFDNRNIFLSFCQKYLFQFDTLRRAKYSSMMILYYLNNPTLVTVGTCSICCANNLFQECWKCEICPECTICSACYKDRGADCHEHKLTHDEQKSTQNEHKLTQNEHKLTQNYSTPLCQSGNQELNEEMMVKLLDVLKHASQCRATNAEPCSYPNCSQIKKLFSHASRCEIRVNQGCQLCKKTWFILTAHSRNCEDSECRIPRCRDLQKHEEMRAIHSASERGAKVVESEVAVAD 1505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00644 1505 Pfam Histone acetylation protein 926 1149 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trre12g00644 1505 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 883 1312 IPR031162 GO:0004402
Trre12g00644 1505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 824 869 IPR013083 -
Trre12g00644 1505 SUPERFAMILY RING/U-box 1295 1364 - -
Trre12g00644 1505 ProSitePatterns Zinc finger PHD-type signature. 792 865 IPR019786 -
Trre12g00644 1505 Gene3D - 1198 1247 IPR043145 -
Trre12g00644 1505 SMART KAT11_2 917 1212 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trre12g00644 1505 Gene3D TAZ domain 1389 1503 IPR035898 -
Trre12g00644 1505 SMART PHD_3 791 866 IPR001965 -
Trre12g00644 1505 SUPERFAMILY RING/U-box 1180 1236 - -
Trre12g00644 1505 PANTHER CBP/P300-RELATED 81 1492 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trre12g00644 1505 SUPERFAMILY FYVE/PHD zinc finger 828 867 IPR011011 -
Trre12g00644 1505 ProSiteProfiles Zinc finger TAZ-type profile. 1393 1477 IPR000197 -
Trre12g00644 1505 MobiDBLite consensus disorder prediction 684 703 - -
Trre12g00644 1505 Pfam TAZ zinc finger 1402 1474 IPR000197 -
Trre12g00644 1505 SMART TAZ_2 1394 1475 IPR000197 -
Trre12g00644 1505 ProSiteProfiles Zinc finger ZZ-type profile. 1200 1256 IPR000433 GO:0008270
Trre12g00644 1505 SUPERFAMILY TAZ domain 1400 1477 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00644 Trre-Chr12 5481504 5488246 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Trre12g00644 HAT_KAT11 5.7e-31 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00644 K04498 - aprc:113866525 1188.71