Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00627 ATGGTTTGTTTCCGATTAGTTATTAAACCATTGAGTAACCGTGCTACATACGAAACTTCCCAGAAGTCATGCATCCGGCTAAAATTAAAGAAAGACTATCTAGATAGCAAGATAGGGGACACACTAGATTTGGTGCCTATTGGTGCTTACTATGGTTCTGGGAAACGTAAAGGAGTCTATGGTTCCTTTCTCCTTGCTTGCTATGACAACGAAAATGAAGAATTTCAAACTATTTGTAAAGTGGGAACCGGATTCAGTGATAAAAAACTTAAAGAACTTTTTGCTACCCTCCGCTATAGAGTGATTCTGAAACCAAAGGCAAAGTATCCATATAATGCAAAAGAAACCAAACCTGATGTCTGGTTTGAAGACTGTGCGGTGTTTGAGGTGAAAGCTTCAGACCTGACCTGTAGTTCTGAATACCCAGCTGCTAAAGGCTTAGTAAATTCGGATAAGGGCATATCTCTTCGTGGTGCACGTCTAGTTGCGGTTCGTATTGACAAAGCCCCTAATCAAGCCACATCGTCTGAGCAGGTTGCTGATATGTATAAAGCTCAAGAACAAAGAAAAGAATCAAACAAACAATCCAATATGACAAATGAAGATGAAGATAAAGGAGATTGA 624 0.3958 MVCFRLVIKPLSNRATYETSQKSCIRLKLKKDYLDSKIGDTLDLVPIGAYYGSGKRKGVYGSFLLACYDNENEEFQTICKVGTGFSDKKLKELFATLRYRVILKPKAKYPYNAKETKPDVWFEDCAVFEVKASDLTCSSEYPAAKGLVNSDKGISLRGARLVAVRIDKAPNQATSSEQVADMYKAQEQRKESNKQSNMTNEDEDKGD 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00627 207 Gene3D - 33 200 IPR012340 -
Trre12g00627 207 MobiDBLite consensus disorder prediction 172 207 - -
Trre12g00627 207 MobiDBLite consensus disorder prediction 183 207 - -
Trre12g00627 207 SUPERFAMILY Nucleic acid-binding proteins 39 186 IPR012340 -
Trre12g00627 207 ProSiteProfiles ATP-dependent DNA ligase family profile. 6 69 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre12g00627 207 FunFam DNA ligase 36 196 - -
Trre12g00627 207 Pfam ATP dependent DNA ligase C terminal region 56 168 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre12g00627 207 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 6 204 - -
Trre12g00627 207 CDD OBF_DNA_ligase_I 39 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00627 Trre-Chr12 5351113 5352678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00627 3 194 Core DNA Replication Machinery Family AT1G08130 57.812 7.92e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00627 K10747 - mnt:21403526 229.18