Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00626 ATGACAGATGAGTTGGAAGAGCGACGCGGATATGAAACAGAAAGTGATGAGTTTGATTATTTGATGAGTTGTGAAGGATTAGTTATTAAACCATTGAGTAACCGTGCTACATACGAAACTTCCCAGAAGTCATGCATCCGGCTAAAATTAAAGAAAGACTATCTAGATAGCAAGATAGGGGACACACTAGATTTGGTGCCTATTGGTGCTTACTATGGTTCTGGGAAACGTAAAGGAGTCTATGGTTCCTTTCTCCTTGCTTGCTATGACAACGAAAATGAAGAATTTCAAACTATTTGTAAAGTGGGAACCGGATTCAGTGATAAAAAACTTAAAGAACTTTTTGCTACCCTCCGCTATAGAGTGATTCTGAAACCAAAGGCAAAGTATCCATATAATGCAAAAGAAACCAAACCTGATGTCTGGTTTGAAGACTGTGCGGTGTTTGAGGTGAAAGCTTCAGACCTGACCTGTAGTTCTGAATACCCAGCTGCTAAAGGCTTAGTAAATTCGGATAAGGGCATATCTCTTCGTGGTGCACGTCTAGTTGCGGTTCGTATTGACAAAGCCCCTAATCAAGCCACATCGTCTGAGCAGGTTGCTGATATGTATAAAGCTCAAGAACAAAGAAAAGAATCAAACAAACAATCCAATATGACAAATGAAGATGAAGATAAAGGAGATTGA 687 0.3959 MTDELEERRGYETESDEFDYLMSCEGLVIKPLSNRATYETSQKSCIRLKLKKDYLDSKIGDTLDLVPIGAYYGSGKRKGVYGSFLLACYDNENEEFQTICKVGTGFSDKKLKELFATLRYRVILKPKAKYPYNAKETKPDVWFEDCAVFEVKASDLTCSSEYPAAKGLVNSDKGISLRGARLVAVRIDKAPNQATSSEQVADMYKAQEQRKESNKQSNMTNEDEDKGD 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00626 228 ProSiteProfiles ATP-dependent DNA ligase family profile. 23 90 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre12g00626 228 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 23 225 - -
Trre12g00626 228 Gene3D - 17 56 - -
Trre12g00626 228 Gene3D - 57 221 IPR012340 -
Trre12g00626 228 FunFam DNA ligase 57 217 - -
Trre12g00626 228 CDD OBF_DNA_ligase_I 60 206 - -
Trre12g00626 228 ProSitePatterns ATP-dependent DNA ligase signature 2. 25 51 IPR016059 GO:0003909
Trre12g00626 228 SUPERFAMILY Nucleic acid-binding proteins 60 207 IPR012340 -
Trre12g00626 228 MobiDBLite consensus disorder prediction 193 228 - -
Trre12g00626 228 MobiDBLite consensus disorder prediction 204 228 - -
Trre12g00626 228 Pfam ATP dependent DNA ligase C terminal region 77 189 IPR012309 GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00626 Trre-Chr12 5350819 5352678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00626 22 215 Core DNA Replication Machinery Family AT1G08130 58.247 5.67e-69 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00626 K10747 - mnt:21403526 236.884