Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00616 ATGACGCGTATTGCCGTCGTAAACAACGACAGATGCAAACCCAACAAGTGTCGTCAAGAGTGCAAGAAGAGTTGTCCTATAGTCTCACAAGGAAAATTATGTATTGAGGTTACTTCTACGTCCAAGGTTGCTTACATATCCGAGGAATTGTGCACTGGATGCAGATTTTGTATTAAGAAATGTCCTTTTGAAGCCATCCAAATCATCAACTTGCCAGAGAATTTGGACAAAGATACCACTCATAGATATGGTCCTAATACCTTTAAGCTACACAGGTTGCCGGTTCCCAGGCCGGGGCAAGTGCTTGGTTTGGTTGGGATAAATGGAATTGGGAAGTCCACTGCACTTAAGGTTTTGTCTGGAAAACTGAAGCCCAACTTGGGTCGTTTCACAGAACCCCCTGATTGGCAGGAAATTGTGACCCATTTTCGAGGATCTGAATTGCAGAATTACTTTACTCGCATTCTAGAGGATAATTTGAAGGCTATCACCAAGCCTCAGCATGTTGACAACATTCCAAAAACTGTGCAAGGGAATGTGGGGCAGGTGCTAGACCAATATAATGAGAGAGATATGAAGGAAAGCCTTTGTGCTGATCTTGAGCTTAATCAAGTTATAGATCGTAATGTTGGTGATCTTTCGGGGGGTGAGGTCCAAAGGTTTGCCATTGCAGTTGTTGCCATCAGAAATGCTGAGATATACATGTTTGATGAACCTTCCAGTTATCTTGATGTGAAACAGAGGCTAAAAGCTGCTCAAGTTGTTCGGTCATTGCTCAAGCCTAATAGCTATGTAATTGTTGTCGAGCACGATCTTAGTGTTTTGGACTACTTATCAGACTTTATTTGCTGTTTGTATGGAAAACCTGGTGCATACGGTGTTGTAACACTCCCTTTCTCAGTCAGAGAAGGAATTAATATCTTCTTGTCCGGCTTTGTTCCAACAGAAAATCTTAGGTTTCGGGAGGTCTCTCTTAGTTTCAAGGTTGCAGAGACTCCGCAGAAAACTGCTGAGGAAGCTCAAACTTATGCTCGATTCAAATACCCAACCATGACTAAAACTCAAGGCAATTTCAGGCTTCATGCAGTTGAAGGAGAATTTACAGATTCACAGATTATTGTGATGCTGGGCGAGAATGGGACAGGAAAGACAACATTCATTCGTATGCTGGCTGGTTTGTTGAAACCCGATAGTATAGAAGGTGGATCTGATGTGGAGATGCTTGAGTTCAACGTATCATACAAACCTCAGACAAATAGCGGAAGGTCCCAATTACCTGTTAGAGACTTGCTACATAAAAAAATCCGTGATGCATGTACTCATCCCCAGTTTATATCAGATGTGATGAAGCCACTACTTATTGAACAGTTGATGGACCAAGAGGTTCAGAATCTTTCTGGTGGAGAGTTGCAAAGAGTTGCCTTATGCCTTTGTCTTGGAAAGCCTGCAGACATCTATCTGATAGATGAGCCAAGTGCATTTCTTGATTCGGAACAACGTATTATTGCTGCAAAAGTCATCAAGAGGTTTATTCTTCATGCAAAGAAAACAGCCTTTATCGTGGAGCATGATTTCATCATGGCAAATTATCTTGCTGACAGAGTTATCGTTTACGAGGGTCAACCTTCAATTGATTGTACTGCAAATTCTCCACAATCATTACTTACTGGGATGAACCTTTTCTTATCTCATCTTGATATCACATTTAGAAGAGACCCAACTAATTTCCGCCCAAGGATCAACAAACTTGGATCAACAAAGGACAAAGAGCAAAAGAATGCCGGGTCTTATTATTACCTTGATGACTGA 1809 0.4157 MTRIAVVNNDRCKPNKCRQECKKSCPIVSQGKLCIEVTSTSKVAYISEELCTGCRFCIKKCPFEAIQIINLPENLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGINGIGKSTALKVLSGKLKPNLGRFTEPPDWQEIVTHFRGSELQNYFTRILEDNLKAITKPQHVDNIPKTVQGNVGQVLDQYNERDMKESLCADLELNQVIDRNVGDLSGGEVQRFAIAVVAIRNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLKPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLSGFVPTENLRFREVSLSFKVAETPQKTAEEAQTYARFKYPTMTKTQGNFRLHAVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSIEGGSDVEMLEFNVSYKPQTNSGRSQLPVRDLLHKKIRDACTHPQFISDVMKPLLIEQLMDQEVQNLSGGELQRVALCLCLGKPADIYLIDEPSAFLDSEQRIIAAKVIKRFILHAKKTAFIVEHDFIMANYLADRVIVYEGQPSIDCTANSPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLGSTKDKEQKNAGSYYYLDD 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00616 602 FunFam ATP-binding cassette, sub-family E, member 1 1 328 - -
Trre12g00616 602 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 42 71 IPR017896 -
Trre12g00616 602 Pfam 4Fe-4S binding domain 45 67 IPR017896 -
Trre12g00616 602 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 602 IPR013283 -
Trre12g00616 602 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 565 IPR003439 GO:0005524
Trre12g00616 602 Pfam ABC transporter 361 493 IPR003439 GO:0005524
Trre12g00616 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 287 IPR027417 -
Trre12g00616 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 539 IPR027417 -
Trre12g00616 602 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 51 62 IPR017900 -
Trre12g00616 602 FunFam ATP-binding cassette sub-family E member 1 332 600 - -
Trre12g00616 602 PRINTS ABC transporter family E signature 103 128 IPR013283 -
Trre12g00616 602 PRINTS ABC transporter family E signature 75 95 IPR013283 -
Trre12g00616 602 PRINTS ABC transporter family E signature 152 178 IPR013283 -
Trre12g00616 602 PRINTS ABC transporter family E signature 48 72 IPR013283 -
Trre12g00616 602 PRINTS ABC transporter family E signature 20 35 IPR013283 -
Trre12g00616 602 PRINTS ABC transporter family E signature 136 152 IPR013283 -
Trre12g00616 602 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 2 32 IPR007209 -
Trre12g00616 602 SMART AAA_5 98 290 IPR003593 GO:0016887
Trre12g00616 602 SMART AAA_5 369 543 IPR003593 GO:0016887
Trre12g00616 602 Gene3D - 334 600 IPR027417 -
Trre12g00616 602 SUPERFAMILY 4Fe-4S ferredoxins 3 140 - -
Trre12g00616 602 Gene3D - 1 328 IPR027417 -
Trre12g00616 602 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 66 311 IPR003439 GO:0005524
Trre12g00616 602 Pfam ABC transporter 98 240 IPR003439 GO:0005524
Trre12g00616 602 CDD ABC_RNaseL_inhibitor_domain1 74 328 IPR034348 -
Trre12g00616 602 ProSitePatterns ABC transporters family signature. 465 479 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00616 Trre-Chr12 5274274 5278864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00616 346 523 Calmodulin-binding Proteins AT2G36910 26.531 1.46e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00616 K06174 - gmx:100797423 1082.78