Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00608 ATGGAAGAAGAATCTGATGAACCAATTCTTTCTCAATCTCACGCTCGTATGGTTCAAGGTATGGATCGGGTGGTTGTGACGGTTACTGGTTACCATGGATCTGAGCGATTTAACCTTATTAAGCTGATTTCGCTTGCCGGTGCAAATTATGTTGGGGATATGTCGAAATCAATAACGCATCTGGTGTGTTGGAAGTTTGAAGGTAAGAAATATGACATTGCCCGGAAGTTAGGAAAGCGTATAGTCAACCACCGTTGGGTTGAAGACTGCATAAAGGAAGGAAGGCGTGTCCCAGAAGATTCCTATATTTTGCAAAGTGGCCAGGAAGTTGGTCCATTGTTACTGGAAGTTCCAGTCACTGTTCAAGCAAGTAGTAGATTATGTGCTATTGGATCTGAAAGGCAAAATACTGACTTCAGTTCTGGGCTCGGTGGAATTTCCGTTTTGGAAGATTCTTCTTTATTGAAAAAGCATGAGGAGTCAAGTTCATATTCATCTATACTGTCAAGGAAAGGTAAAAGAAACCGTGGTAATGATGTTAGTACCACGGCTCGGCATTCTCGTAGAGGAAGAAGGGTTATGAAAAATGATGATGAAGTGGAGTTGAGCCCTATAGTTTTGGATTCAAGCACAGACGACCAGATTTGCGAAATGAATAGGCTAAACACTGAAGCTGCAGCTACCTCTGCCCTGTCTAGCCATGTCAATATTGACGATATTCAAGAAAACAGTGAAGGGCTTGATGCTGAACTATCTAGTCAAAGTAGAACTATCGATGGAAGTTCAGTTGGCATTGACCAGAGCAGAGATTCAAATCATATATCTGCTGTCAGAAGTTCAACTTTGTTTATAGAAGATCCCCTTCCTTTGACACAAACATCAGTAGATTTATGTTCCAGTGCTGCTGAAAAGTTGACGGATGGTGATGTGGTTGATAATTTTGATGACTTACCTACTTCAAATGAGTTGTCATGCGTTATATGTTGGACAGATTTCAGTTCAACAAGGGGAATTTTGGAGTGTGGACATCGGTTTTGTTATACATGCATCCAGGGTTGGGTTGCTTGCAAGACAGCAATGGGGAAAATTTCAAACTGTCCTTTGTGCAAGGCAATTATTACAAGGATCATGAAAGTTGAGGATGCAGCCACCACTGATCAAAAAGCATACTCCCAGACAATTCCATGTGATAACATAAGCTCAGATATTTTTATCCCCATGGATCAGGAATTTCCAGACAATAACTTAGAGTCCTCACAGGTAGGTGCTTGTGTAATTTGCCGTGGTCGGGAACCTGAAGAGCTACTCGAGAATTGCGATGTTTGTCGATGTCGAAGAATTCATTCCTATTGCATGGACCCTCCTTTACGGCCTTGGACATGCAGTTCCTGCAAGGAACTTCGAATGCTTTATCGTAACCGGTCATATTAG 1431 0.4186 MEEESDEPILSQSHARMVQGMDRVVVTVTGYHGSERFNLIKLISLAGANYVGDMSKSITHLVCWKFEGKKYDIARKLGKRIVNHRWVEDCIKEGRRVPEDSYILQSGQEVGPLLLEVPVTVQASSRLCAIGSERQNTDFSSGLGGISVLEDSSLLKKHEESSSYSSILSRKGKRNRGNDVSTTARHSRRGRRVMKNDDEVELSPIVLDSSTDDQICEMNRLNTEAAATSALSSHVNIDDIQENSEGLDAELSSQSRTIDGSSVGIDQSRDSNHISAVRSSTLFIEDPLPLTQTSVDLCSSAAEKLTDGDVVDNFDDLPTSNELSCVICWTDFSSTRGILECGHRFCYTCIQGWVACKTAMGKISNCPLCKAIITRIMKVEDAATTDQKAYSQTIPCDNISSDIFIPMDQEFPDNNLESSQVGACVICRGREPEELLENCDVCRCRRIHSYCMDPPLRPWTCSSCKELRMLYRNRSY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00608 476 SMART BRCT_7 18 94 IPR001357 -
Trre12g00608 476 Gene3D BRCT domain 16 103 IPR036420 -
Trre12g00608 476 ProSiteProfiles BRCT domain profile. 13 104 IPR001357 -
Trre12g00608 476 ProSiteProfiles Zinc finger RING-type profile. 325 370 IPR001841 -
Trre12g00608 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 475 IPR013083 -
Trre12g00608 476 Pfam Ring finger domain 324 370 IPR001841 -
Trre12g00608 476 SUPERFAMILY FYVE/PHD zinc finger 413 467 IPR011011 -
Trre12g00608 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 395 IPR013083 -
Trre12g00608 476 MobiDBLite consensus disorder prediction 172 195 - -
Trre12g00608 476 SUPERFAMILY RING/U-box 315 378 - -
Trre12g00608 476 SUPERFAMILY BRCT domain 20 105 IPR036420 -
Trre12g00608 476 Pfam twin BRCT domain 24 86 IPR001357 -
Trre12g00608 476 ProSitePatterns Zinc finger RING-type signature. 341 350 IPR017907 -
Trre12g00608 476 PANTHER F5A8.9 PROTEIN 147 474 - -
Trre12g00608 476 MobiDBLite consensus disorder prediction 165 195 - -
Trre12g00608 476 SMART ring_2 325 369 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00608 Trre-Chr12 5161528 5167156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00608 42 110 Core DNA Replication Machinery Family AT4G02110 39.437 3.25e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00608 - - cam:101495587 597.045