Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00582 ATGTCTCGTTATCCTTCTTCAAATCCCTTCGCAACGATTCACTCAGATTCCGATTCTGATACCGATTCACTGAGTCAATTCGTCACCGATCTCTTCGAAAATGGTTCCCCTTCCGATCCTGCTTGTCCTTGGGAAGATGAAGATGATCCAATATACCTAAACCCTTTCTCCGTTCTTGCTTGCGATGTTCATCAAGTGGGTGGTGGTGATGATGATTCTACTGGGCTTAGGGTTATTGAATTTGGTACTGATTCGGAATCGAGTGGGAATGATGAAGAATTTGATTATAGGGGAGAGAATGACGATGGTGATGAGAGGGTTGGTGGAATTTGTTGGGATAGTCTTTGTTTGGAGGATCATAGGAGTATTTTGAATGATTGGGAGGAAGTGGTAGAGGAGAGGGCGAATGAGGATGCGAATGAGATTGGAGATTCTTCTAGTTTGTTGATTGATGACGAGGTTGATGTTGATGTTGATGTTGAGGATGATCGGTCAGTGGCATCGGGGTTTGAGGAGGAAGAAGAGGAACCAGGCGAAGAGGCGTTGAGGTATTTGGAGTGGGAGATTCTATTGGCTTTTAACAATTTAGAGAGGAGTGGTGGATTGGAACATGAAGATGAGAGTCTTAATAATTTGTATTTAGCTGTTCACGATAGTATTATATCGGGAAACAATGATTATGATATTCTTTTTGGACAGTTAATGGAGAATGAGAGTAGTTTGAAGGGTAGTCCACCTGCGGCAAAGAGTTTCGTGGAGAATCTTCCTTTGGTGGAACTGACGGAGGAGGAGTTGAAAAAGAAGGATGTTGTGTGTGCTGTTTGTAAAGATGAGGTAATGGTGGAAGAGAAGGTGAGGAAGCTACCTTGCTCACATTATTACCATGGAGATTGTATTTTGCCGTGGTTGAGTATTCACAACACGTGTCCTGTTTGTCGGTTTGAGTTGCCAACGGATGATGCTGATTACGAGCAGAGTTATGCCCCCAAACTTATGTAA 999 0.4304 MSRYPSSNPFATIHSDSDSDTDSLSQFVTDLFENGSPSDPACPWEDEDDPIYLNPFSVLACDVHQVGGGDDDSTGLRVIEFGTDSESSGNDEEFDYRGENDDGDERVGGICWDSLCLEDHRSILNDWEEVVEERANEDANEIGDSSSLLIDDEVDVDVDVEDDRSVASGFEEEEEEPGEEALRYLEWEILLAFNNLERSGGLEHEDESLNNLYLAVHDSIISGNNDYDILFGQLMENESSLKGSPPAAKSFVENLPLVELTEEELKKKDVVCAVCKDEVMVEEKVRKLPCSHYYHGDCILPWLSIHNTCPVCRFELPTDDADYEQSYAPKLM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00582 332 FunFam E3 ubiquitin-protein ligase RING1-like 233 319 - -
Trre12g00582 332 SUPERFAMILY RING/U-box 259 319 - -
Trre12g00582 332 Pfam Ring finger domain 272 313 IPR001841 -
Trre12g00582 332 SMART ring_2 272 312 IPR001841 -
Trre12g00582 332 ProSiteProfiles Zinc finger RING-type profile. 272 313 IPR001841 -
Trre12g00582 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 319 IPR013083 -
Trre12g00582 332 MobiDBLite consensus disorder prediction 82 101 - -
Trre12g00582 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 160 317 - -
Trre12g00582 332 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00582 Trre-Chr12 4868542 4869762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00582 187 325 C3H Transcription Factor Family AT3G02340 51.678 3.14e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00582 - - gmx:100812037 271.552