Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00576 ATGACAATCGGAACTCTTGCACCGAAGGCAGACAATAAGAAACCAAGGAAGAAGAAGGAAGTTGTTGATGAGAATGCGCCTTTGTTACCTAAGACTCAAGAAACAGATGCCGAATTCCATGAATTTAATGGAGCTTCATTTACCGGGGCTGTTTTCAATTTGTCCACCACAGTTATTGGTGCTGGGATCATGGGCTTGCCTGCTTGCGTCAAAAAATTGGGAATGGTGCCTGGCCTTCTTGCCATAATCCTAACAGCATTATTAACAGAGAAGGCAATTGAGTTCATGATCAGGTTTTCGAGGGCAGGGAATATTTCTTCCTATGGAAGTCTTATGGGGGATGCCTTTGGGAAATACGGAAAAGCTTCGGTAGAGTTATGTATCGTAATCGGTAACATTGGTATTCTTATTGTTTACATGATCATTATTGGTGATGTGATTTCTGGAACAACTTCAAGTGGGATTCACCATTCTGGTATCCTTGAAGGATGGTTTGGTGTCCATTGGTGGACTGGGCGTACATTTGTGATTGTTTTCACAACGCTCGCTGTGTTTGCACCTTTGGTCAGCCTCAAACGAATTGATTCATTGAGATTCACATCTGCATTGTCAATTGGATTAGCAGTTGTTTTCCTTGTCATTGCTGCGGGGATCTCAATTATCAAGATTATTAGTGGAGGCATTGGAATGCCCAGACTCTTCCCCATCATTACTGATGTAGCCTCTGTTCTTGATCTATTCACTGTAGTTCCAGTGCTGATGACAGCCTACATCTGTCACTACAATGAAGTTTCAGTTATGTGGGAGGATGGCATGATTGCAGTTAGCTATCTTGATCCACCTGTTTACTTCATGGATTTCATAACATATGAACTGGAGGATTCCTCACAGATGCGTGGGGTTGTGCGTGCTTCCCTTACTCTATGCTCTTCAGTGTACGTACTGACAAGCTTCTTTGGGTTCCTTTTATTTGGCGAAGGAATTCTTGATGACGTGCTTGCAAATTTTGATACTGATCTTGGAATTCCTTTCGGTTCTGCACTCAATGATGCTGTTCGTTTTAGCTATGCTGCGCATCTTGTACTTGTATTTCCTGTAGTGTTCTATGCAGTGAGGGTCAACATAGATGGTCTCATATTTTCCTCTTCAAGAAGGCCTTTGCTTGTTGATAACTTCAGATTTGCATCAATTACTATTGCCCTTGTTGGCACTATCTTCTTGGGAGCAAATTTCATACCTAACATTTGGGTAATTTTCCAGTTTGCTGGAGCAACAAGTTCTGTTTGTATAGCATTCATATTTCCAGCTGCAATCACTCTGAGGGATCGTTATAACATAGCAACTAAAACAGACAGGATTATGTCTTTCCTTATGATAGTCCTTGCAGTCTTGTCAAATGCTATAGCGATATACAGTGATGCCTATGCTTTGATCAACAAGAAAAAAACTTAA 1452 0.4125 MTIGTLAPKADNKKPRKKKEVVDENAPLLPKTQETDAEFHEFNGASFTGAVFNLSTTVIGAGIMGLPACVKKLGMVPGLLAIILTALLTEKAIEFMIRFSRAGNISSYGSLMGDAFGKYGKASVELCIVIGNIGILIVYMIIIGDVISGTTSSGIHHSGILEGWFGVHWWTGRTFVIVFTTLAVFAPLVSLKRIDSLRFTSALSIGLAVVFLVIAAGISIIKIISGGIGMPRLFPIITDVASVLDLFTVVPVLMTAYICHYNEVSVMWEDGMIAVSYLDPPVYFMDFITYELEDSSQMRGVVRASLTLCSSVYVLTSFFGFLLFGEGILDDVLANFDTDLGIPFGSALNDAVRFSYAAHLVLVFPVVFYAVRVNIDGLIFSSSRRPLLVDNFRFASITIALVGTIFLGANFIPNIWVIFQFAGATSSVCIAFIFPAAITLRDRYNIATKTDRIMSFLMIVLAVLSNAIAIYSDAYALINKKKT 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00576 483 MobiDBLite consensus disorder prediction 1 22 - -
Trre12g00576 483 Pfam Transmembrane amino acid transporter protein 289 472 IPR013057 -
Trre12g00576 483 Pfam Transmembrane amino acid transporter protein 45 267 IPR013057 -
Trre12g00576 483 PANTHER AMINO ACID TRANSPORTER 40 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00576 Trre-Chr12 4846864 4850649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00576 18 481 Amino Acid or Auxin Permease AAAP Family AT5G38820 60.515 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00576 K14207 - gmx:100791286 681.404