Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00554 ATGGGTTCTGTTTGTTGTTGTTTGAGCTTTGATGATTTTGAAGATTATGCAAATCCAAATAATCCTGTGTATAGGAACTGTGTGTGTCTCAGTTGCTTGCTACAGAATCTTTTGAATGTGTATTCATCAATATTCCGTAGAGGGGAAGCACATTCAATTCCTTCATCTCTTCAGGGAACAGCATCCATGACTTCTGCAACATCACTTGACAATTCTCTATCAGACATGTACCGTTCTCCACCAAGGCCCTTACCTTATGATGCAGAGCCTCGGTTTTTCCGCTCGCAACGTGATGGACTAGTTTCAAGGCGTGAGAAAAGTTCAAGTCATTCAAACGAGGAAACTGAACCTCTAAGAAGTGATGTAGATACAGATTCAGAACCTTTAAATTCAGCTGAAAAATGGAATGAATGTGCCTGTGAAGATGAAACGAAGATATACCGTTCTAAGTCCGCATCAAGACTTTCATCAGCAAAATATACAGCTGGAGCTGGACTCATTTATGCGTCATCTGAAGAAGAGGATATCTGTCCAACTTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCTCGCATCATTTTCACCTCGGTTGCATCTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGGAAATGGAATTTGATGAAACAACATACTCTTGA 690 0.4 MGSVCCCLSFDDFEDYANPNNPVYRNCVCLSCLLQNLLNVYSSIFRRGEAHSIPSSLQGTASMTSATSLDNSLSDMYRSPPRPLPYDAEPRFFRSQRDGLVSRREKSSSHSNEETEPLRSDVDTDSEPLNSAEKWNECACEDETKIYRSKSASRLSSAKYTAGAGLIYASSEEEDICPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKEMEFDETTYS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00554 229 CDD RING-H2_AIRP1-like 173 221 - -
Trre12g00554 229 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Trre12g00554 229 SUPERFAMILY RING/U-box 172 224 - -
Trre12g00554 229 MobiDBLite consensus disorder prediction 98 130 - -
Trre12g00554 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 226 IPR013083 -
Trre12g00554 229 SMART ring_2 177 217 IPR001841 -
Trre12g00554 229 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Trre12g00554 229 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Trre12g00554 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 56 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00554 Trre-Chr12 4492905 4496853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00554 1 226 C3H Transcription Factor Family AT5G15790 57.576 3.01e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00554 - - gmx:100777068 414.846