Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00553 ATGCTCAAAACGCTTGATAGGTACCAAAAGTGCAGCTATGGAGCAGTAGAAGTCAACAAACCTGCCAAAGAGCTTGAGAGCAGTTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAAAGAAACCTTCTTGGTGAAGACTTGGGTCCATTAGGTACCAAAGATCTAGAGCAGCTTGAACGCCAACTTGATTCATCTCTCAAGCAAGTCAGGTCCACTAAGACCCAATTCATGTTGGACCAATTAGCTGATCTTCAAAATAAGGAGCACATGTTGGTAGAAGCAAACAGATCTTTGACTATGAAGCTGGAAGAAATGAATATCAATACAAGAAATCAGTATAGGCAAACATGGGAAGCTGGTGATCAAAGTATGGCATATGGTAATCAAAATGCTCACTCACAAAGCTTCTTCCAGCCTTTGGACTGCAATCCAACATTGCAGATAGGGACTGATTACAGGTACAGTCCTGTGGCATCAGATCAGCTAACTGCTGCAACAACTCAAGCTCAACAAGTTAATGGATTTATTCCTGGATGGATGCTTTAA 567 0.418 MLKTLDRYQKCSYGAVEVNKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLTMKLEEMNINTRNQYRQTWEAGDQSMAYGNQNAHSQSFFQPLDCNPTLQIGTDYRYSPVASDQLTAATTQAQQVNGFIPGWML 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00553 188 ProSiteProfiles K-box domain profile. 25 115 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre12g00553 188 Pfam K-box region 23 109 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre12g00553 188 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00553 Trre-Chr12 4487777 4491631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00553 1 188 MADS-box Gene Family AT5G15800 64.179 1.61e-78 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00553 K09264 - gmx:100785322 335.109