Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00552 ATGGGAAGGGGAAGAGTGGAATTGAAAAGGATAGAGAATAAGATAAACAGACAAGTTACATTTGCAAAGAGAAGAAATGGTCTTCTTAAGAAAGCTTATGAGTTATCTGTTCTTTGTGAAGCTGAGGTTGCTCTTATTATCTTCTCCAATAGAGGCAAGCTTTATGAGTTTTGTAGCAGTCCTAGCATGCTCAAAACGCTTGATAGGTACCAAAAGTGCAGCTATGGAGCAGTAGAAGTCAACAAACCTGCCAAAGAGCTTGAGAGCAGTTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAAAGAAACCTTCTTGGTGAAGACTTGGGTCCATTAGGTACCAAAGATCTAGAGCAGCTTGAACGCCAACTTGATTCATCTCTCAAGCAAGTCAGGTCCACTAAGACCCAATTCATGTTGGACCAATTAGCTGATCTTCAAAATAAGGAGCACATGTTGGTAGAAGCAAACAGATCTTTGACTATGAAGCTGGAAGAAATGAATATCAATACAAGAAATCAGTATAGGCAAACATGGGAAGCTGGTGATCAAAGTATGGCATATGGTAATCAAAATGCTCACTCACAAAGCTTCTTCCAGCCTTTGGACTGCAATCCAACATTGCAGATAGGGACTGATTACAGGTACAGTCCTGTGGCATCAGATCAGCTAACTGCTGCAACAACTCAAGCTCAACAAGTTAATGGATTTATTCCTGGATGGATGCTTTAA 753 0.4064 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCSSPSMLKTLDRYQKCSYGAVEVNKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLTMKLEEMNINTRNQYRQTWEAGDQSMAYGNQNAHSQSFFQPLDCNPTLQIGTDYRYSPVASDQLTAATTQAQQVNGFIPGWML 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00552 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre12g00552 250 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre12g00552 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre12g00552 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre12g00552 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 184 - -
Trre12g00552 250 Coils Coil 124 144 - -
Trre12g00552 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre12g00552 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre12g00552 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre12g00552 250 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Trre12g00552 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre12g00552 250 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Trre12g00552 250 FunFam MADS-box transcription factor 1 13 88 - -
Trre12g00552 250 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre12g00552 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00552 Trre-Chr12 4485342 4491631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00552 1 250 MADS-box Gene Family AT5G15800 71.483 1.45e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre12g00552 K-box 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00552 K09264 - gmx:100785322 446.817