Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00545 ATGAGGCTTTTAATTTCAGCTCTTTGTGTTCTTGTGCTATTCTCTTATGCAGTTGCTTATGATCCTTTGGATCCAAAGGATCCAAATGGAAACATCACAATCAAATGGGATGTTATTTCGTGGACACCAGATGGTTATGTGGCGTCAGTAACAATCAACAATTTCCAAAAGTTTCGACAAATAAAGAATCCGGGATGGACATTAGGATGGTCTTGGGCTAAGAAAGAAGTTATATGGGTAATGTTAGGAGCTCAAGCAACAGAACAAGGTGATTGTTCTAGATTCAAAGGAAACATACCTCATTCCTGCAAGAAAATCCCTACAGTTGTAGACCTTCTCCCAGGTACACCTTACAATCAGCAAGTAGCAAACTGTTGTAAAGGTGGTGTGGTTGCAGCATTGGGACAATCAGCTTTTCAAGTTACTGTAGGACAAGCTGGTAACACAAACAAAACAGTTAGAATTCCACAGAATTTCACTCTTTTGGCTCCACGAGCTCGATATACTTGTCGCCCTGCAAAGATTGTTCCTTCCACTATTTTTATTACTCCTGATAGGCGCCGCATGACTCAAGCTTTCATGACATGGGATGCTATCTGCAAATACTCAAAAGCTTAA 618 0.4045 MRLLISALCVLVLFSYAVAYDPLDPKDPNGNITIKWDVISWTPDGYVASVTINNFQKFRQIKNPGWTLGWSWAKKEVIWVMLGAQATEQGDCSRFKGNIPHSCKKIPTVVDLLPGTPYNQQVANCCKGGVVAALGQSAFQVTVGQAGNTNKTVRIPQNFTLLAPRARYTCRPAKIVPSTIFITPDRRRMTQAFMTWDAICKYSKA 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00545 205 PANTHER PROTEIN COBRA 8 204 IPR006918 GO:0010215|GO:0016020
Trre12g00545 205 Pfam COBRA-like protein 46 203 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00545 Trre-Chr12 4372795 4374352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00545 17 204 COBRA Gene Family AT5G15630 70.103 4.64e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00545 - - gmx:100798678 334.724