Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00544 ATGAGGCTTTGTTTTTCATTTCTTTCTGTTCTTGTGCTATCCTCTTATGCAGTTGCTTATAATCATTTGGATCCAAATGGAAACATAACAATCAAATGGGATGTTATTAAGTGGACATCAGATGGTTATGTAGCGTTAGTAACAATCAACAATTTCCAAAAGTTTCGACAAATAAAGAATCCGGGATGGACGTTAGGATGGTCTTGGGCTAAGAAAGAAATTATATGGGATATGCTAGGAGCTCAAACAACAGAACAAGGAGACTGTTCTAGGTTCAAAGGCAACAGTATTATACCTCATTGCTGCAAGAAAATCCCTACAGTTGTAGACCTTCTTCCGGGTGTACCTTACAATCGACAATACACAAACTGTTGTAAAGGTGGTGTGATTGCAGCTTGGGGACAGTCAGTTTTTGAAGTTATTGTAGGAGAAGCTGGTACCTCAAACAAAACAGTTAGACTTCCGAAGAATTTCACTCTTTTGGCTCCAGGACCTGGATATACTTGTAGCCCTACAAAGATTGTTCCTTCCTCCATTTTTCTTTCTCCTGATAAACGCCGCAAGGGTCAAGCGTTTAGTAAGTTTTCTAACTAG 594 0.3923 MRLCFSFLSVLVLSSYAVAYNHLDPNGNITIKWDVIKWTSDGYVALVTINNFQKFRQIKNPGWTLGWSWAKKEIIWDMLGAQTTEQGDCSRFKGNSIIPHCCKKIPTVVDLLPGVPYNRQYTNCCKGGVIAAWGQSVFEVIVGEAGTSNKTVRLPKNFTLLAPGPGYTCSPTKIVPSSIFLSPDKRRKGQAFSKFSN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00544 197 PANTHER PROTEIN COBRA 7 194 IPR006918 GO:0010215|GO:0016020
Trre12g00544 197 Pfam COBRA-like protein 43 194 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00544 Trre-Chr12 4367793 4368924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00544 17 192 COBRA Gene Family AT5G15630 73.077 1.65e-98 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00544 - - gmx:100783410 314.309