Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00543 ATGAGGCTTTGTTTTTCATTTCTTTCTGTTCTTGATCCAAATGGAAACATACCAATCAAATGGGATGTTATTGCATGGACACCAGATGGTTATGTGGCGATGGTAACAATCAACAATTTCCAAAAGTTTCGACAAATAAAGAATCCGGGATGGACATTAGGATGGACTTGGGCTAAGAAAGAAGTTATATGGGATATGCTAGGAGCTCAAACAACAGAACAAGGTGATTGTTCTAGATTCAAAGGAAACATACCTCATTCCTGCAAGAAAATCCCTATAGTTGTAGACCTTCTCCCAAGTGTATCTTACTATCGGCAAGTCCCAAACTGTTGTAAAGGCGGCGTGGTTGCAGCATTGGGACAATCAGAATTTGAAGCTACTATAGGACAAGCTGGTAACACAAGCAAAACAGTTAGAATTCCACAGAATTTCACTCTTTTGGCTCCAGAAGCTCGATATACTTGTCGCCCTGCAAAGATTGTTCCATCCACCGTTTATATTACTCCTGATAGGCGCCGCACGACTCGAGCTTTCATGACATGGGATGCTATCTGCAAATATGCAAAAGGTTAA 573 0.4101 MRLCFSFLSVLDPNGNIPIKWDVIAWTPDGYVAMVTINNFQKFRQIKNPGWTLGWTWAKKEVIWDMLGAQTTEQGDCSRFKGNIPHSCKKIPIVVDLLPSVSYYRQVPNCCKGGVVAALGQSEFEATIGQAGNTSKTVRIPQNFTLLAPEARYTCRPAKIVPSTVYITPDRRRTTRAFMTWDAICKYAKG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00543 190 PANTHER PROTEIN COBRA 9 188 IPR006918 GO:0010215|GO:0016020
Trre12g00543 190 Pfam COBRA-like protein 31 187 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00543 Trre-Chr12 4364057 4365614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00543 11 189 COBRA Gene Family AT5G15630 65.946 1.67e-90 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00543 - - cpap:110820252 286.574