Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00542 ATGAGGCTTATTTTTTCATTTCTTTGTGTTCTTGTACTATCCTCTTATGCAATTGCTTATGATCCTTTGGATCCAAATGGCAACATAACAATAAAATGGGATGTTATGTCTTGGACACCAGATGGTTATGTGGCGACAGTAACGATCAACAATTTCCAAATGTTTCGACATATAATGAATCCGGGCTGGACGTTAGGCTGGACTTGGGCTAAGAGAGAAGTGATATGGTCAATGGTAGGAGCTCAAACAACTGAACAAGGTGATTGTTCGAGGTTCAAAGGAAACATACCTCATTGCTGCAAGAAAATCCCTACAGTTGTAGACCTTCTCCCTGGTGTACCTTACAATCAGCAATTCGCAAACTGTTGTAAAGGTGGAGTTGTTTCAGCATGGGGACAAGATCCTACACAATCAGTATCAGCTTTTCAAGTTAGTATTGGACAAGCTGGAACATCGAACAGAACAGTTAAACTTCCGAAGAATTTCACTCTTTTGGCTCCAGGACCAGGATATACGTGCGGCCCTGCAAAGATTGTTCCGTCCACCAATTTTCTTACTACTGATAGGCGCCGTAAGACTCAAGCTTTGATGACATGGAATGTTACATGTACTTACTCGCAATTTCTAGCACGAAAGAATCCAAGTTGTTGTGTATCTTTATCTTCCTTCTACAATGAAACCATTACACCTTGTCCCTCGTGTGCATGTGGCTGTCAAAACAAGAAAAACTGTGTCAAGAATGATGCTAAGATTCTGAGTATGGTAGGAGTTCATACACCAAAGAAAGACAATGAACCATTGATGCAGTGTACTCATCATATGTGCCCAATCAGAGTTCATTGGCATGTCAAGAATAACTATAAGGACTATTGGCGAGTCAAAATTGCGGTAACAAATTTCAATTACAGGATGAATTACTCTCTCTGGAGTCTTGCTATTCAACATCCAAATCTCAACAATGTTACTCAAGTTTTCAGTTTTAATTATAAGCCACTTCTACCCTATGAATCCATAAATGACACTGGAATGTTCTATGGCATGAAATACTTCAATGATCTACTAATGGAAGCTGGACCAAAAGGAAATATTCAATCAGAGGTATTACTTCAGAAAAACCAAGATACCTTCACATTCAAGCAAGGATGGGCATTTCCTCACAAGGTTTACTTTAATGGTGATGAATGCATGCTTCCTCCACCCGATACCTACCCTTTTCTCCCAAATTCTTCCCCGGCAAGCCTACTTACCTTCAAGGCACTCATCTTTTCATTACTTTTACTGATAGCAGTTTTGTGA 1296 0.3974 MRLIFSFLCVLVLSSYAIAYDPLDPNGNITIKWDVMSWTPDGYVATVTINNFQMFRHIMNPGWTLGWTWAKREVIWSMVGAQTTEQGDCSRFKGNIPHCCKKIPTVVDLLPGVPYNQQFANCCKGGVVSAWGQDPTQSVSAFQVSIGQAGTSNRTVKLPKNFTLLAPGPGYTCGPAKIVPSTNFLTTDRRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCQNKKNCVKNDAKILSMVGVHTPKKDNEPLMQCTHHMCPIRVHWHVKNNYKDYWRVKIAVTNFNYRMNYSLWSLAIQHPNLNNVTQVFSFNYKPLLPYESINDTGMFYGMKYFNDLLMEAGPKGNIQSEVLLQKNQDTFTFKQGWAFPHKVYFNGDECMLPPPDTYPFLPNSSPASLLTFKALIFSLLLLIAVL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00542 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0016020
Trre12g00542 431 PANTHER PROTEIN COBRA 6 424 IPR006918 GO:0010215|GO:0016020
Trre12g00542 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00542 Trre-Chr12 4358011 4360542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00542 19 431 COBRA Gene Family AT3G29810 65.865 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00542 - - gmx:100798678 826.239