Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00541 ATGTTGTTCTTTCCTTTCCTTAAACCTTGTCCATGCATGCTTTTGTTCCTCTTCTTTACGCTGTTCTACACTTCAACAGAAGCATATGATCCACTTGACCCATACGGAAATATCACAATCAAATGGGACATTAGAGAATGGACTGCTGATGGTTATATGGCTATTGTTACGATGAACAACTTCCAACAATATCGCCATATATCAGCACCTGGATGGTCCTTAGGATGGACATGGGCCAAAAAGGAGGTAATATGGTCAGTGGTGGGAGGACAGACAACTGAACAAGGAGACTGTTCAAAGTTTAAGGGAAACACCCCACATTGCTGTAAAAAAGACCCAACTGTTGTAGATTTACTTCCCGGAGCGCCGTATAATCAACAAATTTCAAATTGTTGTAGAGGTGGTGTACTTAGCTCATGGGCGCAAGATCCAACAAATGCAGTTTCGGCGTTTCAACTCAGCGTCGGTAGTGCTGGTACTACTAACAAAACTGTCAAACTACCGCAAAATTTCACCTTGAAAGCTCCAGGACCAGGCTATACATGCGGACCAGCAAAAATTGTGAGTCCTACTAAATTTATAACAGCGGACAAAAGGAGAGTGACTCAAGCACTTATGACATGGAATGTGACATGCACATATTCACAGTTTCTTGCTCAGAAAACTCCAACTTGCTGTGTCTCCCTCTCGTCTTTCTATAATGATACTATTGTACCCTGCCCGACATGTTCGTGTGGATGCCAAGGCAACTCAGCTCAATCAGGAACCTGTGTAGATCCAAGCGCACCACATTTGGCCTCAGTTGTTAAAGGCCTCGGAAATAACAGTATTATGCCTTTGGTTCGATGTACAAGTCATATGTGTCCGATCAGAGTTCACTGGCACATTAAACTTAACTACAAAGAGTATTGGCGTGTGAAGGTTACTGTTACTAATTTCAATTACAGGATGAATTACTCAGATTGGAACTTGGTCGTGCAACATCCAAACTTTAACAATCTGACTCAACTTTTCAGTTTCAACTACAAATCAATAAATCCCTACGGGTCGATAAATGATACAGCAATGCTTTGGGGCGTTAAATTCTACAATGATTTCCTCAATCAAGCTGGTCCTAATGGTAATGTACAATCAGAGCTACTTTTCCGAAAGGATGATTCTTTTATGTTCGACAAGGGTTGGGGATTTCCTCGGAGGATCTATTTCAATGGTGATGACTGTGTGATGCCACCACCTGATGCTTATCCATGGTTACCCAATGCTGGTTCGAAACACGAGGTTTCCTTCCTTACTTTGATGATGGCTTCGTTGGCTTCATTGGTAGTCTTAGTACTTCACGCATATTGTTAA 1350 0.4193 MLFFPFLKPCPCMLLFLFFTLFYTSTEAYDPLDPYGNITIKWDIREWTADGYMAIVTMNNFQQYRHISAPGWSLGWTWAKKEVIWSVVGGQTTEQGDCSKFKGNTPHCCKKDPTVVDLLPGAPYNQQISNCCRGGVLSSWAQDPTNAVSAFQLSVGSAGTTNKTVKLPQNFTLKAPGPGYTCGPAKIVSPTKFITADKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCSCGCQGNSAQSGTCVDPSAPHLASVVKGLGNNSIMPLVRCTSHMCPIRVHWHIKLNYKEYWRVKVTVTNFNYRMNYSDWNLVVQHPNFNNLTQLFSFNYKSINPYGSINDTAMLWGVKFYNDFLNQAGPNGNVQSELLFRKDDSFMFDKGWGFPRRIYFNGDDCVMPPPDAYPWLPNAGSKHEVSFLTLMMASLASLVVLVLHAYC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00541 449 PIRSF COBRA 2 448 IPR006918 GO:0010215|GO:0016020
Trre12g00541 449 PANTHER PROTEIN COBRA 16 436 IPR006918 GO:0010215|GO:0016020
Trre12g00541 449 Pfam COBRA-like protein 52 215 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00541 Trre-Chr12 4353544 4356724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00541 14 447 COBRA Gene Family AT3G02210 73.853 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00541 - - gmx:100783820 796.193