Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00540 ATGGCACAACAAGAAGAACCATTCAAAGTTGTTGAAGTTTGCAATGTTGAACCATTTGATGAACCAACAAAACATTCTCAATCAGCACCAACCTCACTTCCCCTCACTTTCTTTGATCTTTTATGGTTAAGATTTCCACCAGTTGAATATCTCTACTTCTATGAACTCACAAAATCAACCACTTTTTTCTATGAAACTCTTCTTCCAAATCTCAAACACTCACTTTCACTCACACTTCAACACTTCCTCCCTTTAGCTGGAAACATAACTTGGCCTATTGATTCATCCAAACCAATCATAAACTATGTTCGCGGCGATTCGGTTTCCTTCACTGTTGTTGAGTCCAAATCAAGTTTCAAAGATATTTCTTCACATCATTGTGAAGCTTCACAAAGACATCACTTGATACCACTTTTGAAAACTTGTCATGAAAAAGCTTCTTTGATTTCAATTCAAGTCACTTTGTTTCCAAACAATGGTTTTTGCATTGGAATAACAACACACCATGCTGCTTTAGATGGAAAGTCTGCTACAGATTTTATAAAATCATGGTCCTGTATTACATGTTCTATTTCTAACCTTGATTCATCTTTATCATTGTTATTAGTACCTAAAAATCTGACACCTTTTTTTGATAGATCATTGATACAAGATCATAATAATGGAATTGGAATCAGTGAAACATATGTTGCTGATATTATGAAACAAGGTGGACCAAACAATAAAAGTGTTAAGGTTATAGATTTTCCTAGTACATTGAAAAATGATGCAATTAAAAGCTTATTTGAATTAACACCTTCAAATATTCAAAAGCTTAAGCAACATGCAAAAAATAAGATGAAAATGAATGTTACAAATTTGTCAACATTTTCAGTTACATGTGCTTATGTGTTATCATGTTTAGCAAAAGCAGAACAACCAATGGATGAAAAAGTGATTTTAATATTTGCTGTTGATTGTAGAACAAGATTGAACCCTCCAATTTCTTCTATGTATATTGGAAATTGTGTTGCAGGACAAAAGGTTGAGCTTGAGCCAAAGAAATTAGTTGGAAAAGATGGATTTTTAAGTGCTTTAGAAAGGGTGACTGAAGGTTTGAATAAGGTGAAAAATGATGGAGTGTTGAATGGAGCTGAAAATTGGGCAAATGATATGTTTAATGGTAATGAGACCATTAAATACTCTATTACTGGATCACCAAGGTTTGAAGTTTACAGTATTGATTTTGGATTTGGAAAGCCTAAAAAAGTTGACATAACTTCAACTGATAAGACAGGAGCATTTTCTCTTGGTGAAAGTAGGAATAATGATGGTGGAGTTGAGATTGGTTTGACTTTGAATAAGCAAGAGATGGAAGCTTTTTCTACCCTTTTTGTTCAAGGACTTGAATCCATTTAA 1398 0.3326 MAQQEEPFKVVEVCNVEPFDEPTKHSQSAPTSLPLTFFDLLWLRFPPVEYLYFYELTKSTTFFYETLLPNLKHSLSLTLQHFLPLAGNITWPIDSSKPIINYVRGDSVSFTVVESKSSFKDISSHHCEASQRHHLIPLLKTCHEKASLISIQVTLFPNNGFCIGITTHHAALDGKSATDFIKSWSCITCSISNLDSSLSLLLVPKNLTPFFDRSLIQDHNNGIGISETYVADIMKQGGPNNKSVKVIDFPSTLKNDAIKSLFELTPSNIQKLKQHAKNKMKMNVTNLSTFSVTCAYVLSCLAKAEQPMDEKVILIFAVDCRTRLNPPISSMYIGNCVAGQKVELEPKKLVGKDGFLSALERVTEGLNKVKNDGVLNGAENWANDMFNGNETIKYSITGSPRFEVYSIDFGFGKPKKVDITSTDKTGAFSLGESRNNDGGVEIGLTLNKQEMEAFSTLFVQGLESI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00540 465 Gene3D - 254 465 IPR023213 -
Trre12g00540 465 PANTHER - 9 464 - -
Trre12g00540 465 Pfam Transferase family 22 455 - -
Trre12g00540 465 Gene3D - 4 234 IPR023213 -
Trre12g00540 465 SUPERFAMILY CoA-dependent acyltransferases 285 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00540 Trre-Chr12 4343775 4345172 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00540 51 460 Monolignol Biosynthesis Gene Families AT5G48930 25.532 2.12e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00540 - - mtr:25495413 634.024