Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00537 ATGGCACAAGAATCATTCAAAGTTATTGAAGTTTGCAATATTGAACCATTTCTTGAACCAACAAAGCCTTCTCAATCACCAACCTCACTTCCACTAACTTTCTTTGATCTTCTATGGCTAAGATTTCAACCAGTTGAACGTCTCTTCTTCTATGAATTCACAAACTCAACCCCTTTTTTCTATGAAACTTTTCTTCCAAATCTCAAACACTCACTTTCACTCACACTTCAACACTTTCTCCCTTTCGCCGGGAACATAGTTTGGCCTATTGGTTCATTGAAACCAATAATAAACTATGTTCTTGGTGAATTTGTTTCCTTTACGGTTGTCGAATCAAACTCAAGTTTCAAAGATCTTTCTTCGAATCATTGTGAAGCTTCAAAAAGACATCATTTGATACCCCTTTTGAATACTTCACATGAAAAAGCTTCTTTGGTTTCATTTCAAGTCACTTTGTTTCCAAATAATGGTTTTTGCATTGGAATTACAACACATCATGCTGGTTTAGATGGAAAATCTTCAACAAATTTTATGAAATCATGGTCCTATATTACATGTTCTAATTCTAACCTTGATTCATCTTATTTATCTTTACCTGAAAATCTAACACCTTTTATTGATAGATCATTGATAGAAGATCAATATAATGGAATTAGTGAAGCATATGGTTATGCTTTGATGAAACATGGTGGACCAAATAACAAAAGTCTCAAAGTTTGGGATTCTTTTGGTACATCAAAAACTGATGCAATCAAAAGTTTATTTGAATTAACACCTTCAAACATTCAAAAGCTTAAAGCATATGCAAAAAATGAAATGAAAATGAATGTGACAAATTTGTCAACATTTTCAATTACTTGTGCTTATGTGTTATCATGTTTAGTAGAAGTAGAAAAACCAAAGGAAGAAAAAGTGATGTTCATATTTACTATTGATTGTAGAACAAGATTGGATCCTCAAATTTCTTCTATGTATATTGGAAATTGTGTTAGAGGACAAAAGGTTGAGCTTGAGCCAAAGAAATTAGTTGGAAAAGATGGATTTTTAAGTGCTTTAGAAGGGATGAATGAAGGTTTGAATAAGGTGAAAAATGAAGGAGTGTTGAATGGAGTTGAAAATTGGTTAGATCACATGTTTAATGCTAATGAAAGTATTAAAATATATACTATTGCTGGATCACCAAGGTTTGAAGTTTATGGTATTGATTTTGGATTTGGAAAGCCTAAAAAAGTTGACATAACTTCAACTGATAAGACAGGAGCATTTTCTCTTGGTGAAAGTAGGAATAATGATGGTGGAGTTGAGATTGGTTTGACTTTGAATAAGCAAGAGATGGAAGCTTTTTCTACCCTTTTTGTTCAAGGACTTGAATCCATTTAA 1380 0.3225 MAQESFKVIEVCNIEPFLEPTKPSQSPTSLPLTFFDLLWLRFQPVERLFFYEFTNSTPFFYETFLPNLKHSLSLTLQHFLPFAGNIVWPIGSLKPIINYVLGEFVSFTVVESNSSFKDLSSNHCEASKRHHLIPLLNTSHEKASLVSFQVTLFPNNGFCIGITTHHAGLDGKSSTNFMKSWSYITCSNSNLDSSYLSLPENLTPFIDRSLIEDQYNGISEAYGYALMKHGGPNNKSLKVWDSFGTSKTDAIKSLFELTPSNIQKLKAYAKNEMKMNVTNLSTFSITCAYVLSCLVEVEKPKEEKVMFIFTIDCRTRLDPQISSMYIGNCVRGQKVELEPKKLVGKDGFLSALEGMNEGLNKVKNEGVLNGVENWLDHMFNANESIKIYTIAGSPRFEVYGIDFGFGKPKKVDITSTDKTGAFSLGESRNNDGGVEIGLTLNKQEMEAFSTLFVQGLESI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00537 459 Pfam Transferase family 19 449 - -
Trre12g00537 459 Gene3D - 2 224 IPR023213 -
Trre12g00537 459 PANTHER - 6 458 - -
Trre12g00537 459 Gene3D - 247 459 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00537 Trre-Chr12 4309447 4310826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00537 36 448 Monolignol Biosynthesis Gene Families AT5G48930 23.944 2.52e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00537 - - cam:101513090 625.55