Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00536 ATGAAACCATTGATCAACTTCAAAACCATAATCACCACCCTCTTCTACTTTTCCATCTCCCTCCATAACCCTCAAGCCTACGACCCATTTGACCGTTTTACCCTCAACTGTGGCACAGAAGGAAACTCTACCGACGGAGAAAGAACATGGACAGGAGACACAAACTCAAAACTTTTGTCATCATCTCAAAACAATCCAACAACAACAGTTTCTGTTCCAACAACAACACAAAAACCTTCAATCAACAAAATTCCATATTCAACAGCACGTTTATCACACACAATATTCAACTACTCTTTTCCCGTCACTACAGGTCCTAAATTCCTCCGTCTTTTTTTCTACCCTTCTACTTATACCAACGGTTTTAACCGTCACGACGCTTCTTTCACCGTTATTTCCAACGGTTTCACACTTCTTAAGGATTTTAATGCTTCATTAAACGCTGATGTCGAAGGTGTTGATACTTTGATGAAAGAATATGTTATTAATGTTGGTGATGATCAAAGGCTTGATTTGAGTCTTATTCCAAGTGAAGGAAATTATAATAATTATGCTTTCATAAATGGAATTGAAGTCTTATCCATGCCTAGCGATCTCTATTATACATCACCTGATGATCCTGGATTTCCACTTGTGGTTGTGGGGACCACCGTCACACCGGCATATACTATTTCGACCACCGTTGCACTACAGACAGATTACAGGATCAAAGTTGGAGTGGAACCAAACTCACCAGACATTCAAGACACAGGTATGCTTAGAAACTGGAACATAAAAGACACGGACTATTTAAACACTCCAACAACACGTGACTTTGTCTCAGGAGACATAATAGATACAAGGAACATTACCGTAACCCCGGATTACGTGGCACCAAAAGAACTCTTCAAATCATCACGTGACTTGGGCACAAACTCCACTCTCAACCAACTCTTAAACCTGACTTGGGAATTCCCAGTTGATCCAGACTTCACATACTTGATCAGGCTCCACTTCTGTGAACTCGACCCAAGAATAACCCAAGCGGGTGATAGAGTCTTCATAATCTATTTACAAGGACAAATGGCGTTAGAACAAGCTGATGTTATGAAATGGACCATGAATCAAAAAGGCGTCGCTGTGCAACGAAACTACGCCATTTCAATTCCAAAGAGTAATAATAACAAGAAAGTAAATCTCTATCTTCAAATGCATGGTGATAGTCGACATACCATATACAGTGACCCGTTTTTAAATGGACTTGAAATTTTCAAAATTAGTGATAACAATTTGAAGAATCTAGCTGGACCCAACCCAGACCCGGTTCAAAATCCAAATAACCCGAGTTTGGTTCAAAAAATAAAGAAAAGCACAAGTGCAACGACACTGATCGGTGTCGTTTTGGGAGCTATATTTGGTGTCGTTTTAGTTCTCATTGTTGTTTTCTTCGCTGTTAGAAGAAAATGGGAAATGAAAGGGGAAAAAGCTACAACGACAAAAGAATCAAGCAACACTCAAAACTCATCTCTACCTCCGGCTCTCTGCCGTAGTTTCTCTCTCCTCGAGATATGCACAGCCACAAAAAACTTTGACGTCTGCCTCATCATCGGCGTTGGAGGATTCGGCCACGTGTACAAAGGATACATCGATAATGGTTCAACACCGGTCGCGATCAAAAGACTCAAATCAGGTTCACAACAAGGAGAAAAGGAGTTCATCAATGAGATCGACATGCTCTCAAAGCTTCGTCACCGTCACCTTGTTTCATTAATCGGATACTGCAACGAGAACAACGAAATGATCATCGTCTACCATTTCATGGCCCGTGGAACTTTGCAAGATCATCTCTACAACATGGAGAATCCTGTTTTATCTTGGAAACAACGGTTGCAAATTTCAATTGGCGCGGCACGTGGGTTACACTATCTTCATACAGGTGTGAAACACACGATCATTCACTTGCGGCAAGTTTTACAAGAGAGTGCAGAACTGTGTGAGCCTCAAGATGTTTTGCTTCCTGTTAGTCTTGTGAGTGTTGTTGTTGGGAGCGGGAGCGATGTGGGAATTCTTTTGGATTTTAGCAAGTGA 2067 0.4117 MKPLINFKTIITTLFYFSISLHNPQAYDPFDRFTLNCGTEGNSTDGERTWTGDTNSKLLSSSQNNPTTTVSVPTTTQKPSINKIPYSTARLSHTIFNYSFPVTTGPKFLRLFFYPSTYTNGFNRHDASFTVISNGFTLLKDFNASLNADVEGVDTLMKEYVINVGDDQRLDLSLIPSEGNYNNYAFINGIEVLSMPSDLYYTSPDDPGFPLVVVGTTVTPAYTISTTVALQTDYRIKVGVEPNSPDIQDTGMLRNWNIKDTDYLNTPTTRDFVSGDIIDTRNITVTPDYVAPKELFKSSRDLGTNSTLNQLLNLTWEFPVDPDFTYLIRLHFCELDPRITQAGDRVFIIYLQGQMALEQADVMKWTMNQKGVAVQRNYAISIPKSNNNKKVNLYLQMHGDSRHTIYSDPFLNGLEIFKISDNNLKNLAGPNPDPVQNPNNPSLVQKIKKSTSATTLIGVVLGAIFGVVLVLIVVFFAVRRKWEMKGEKATTTKESSNTQNSSLPPALCRSFSLLEICTATKNFDVCLIIGVGGFGHVYKGYIDNGSTPVAIKRLKSGSQQGEKEFINEIDMLSKLRHRHLVSLIGYCNENNEMIIVYHFMARGTLQDHLYNMENPVLSWKQRLQISIGAARGLHYLHTGVKHTIIHLRQVLQESAELCEPQDVLLPVSLVSVVVGSGSDVGILLDFSK 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00536 688 ProSiteProfiles Protein kinase domain profile. 523 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00536 688 SUPERFAMILY Protein kinase-like (PK-like) 495 646 IPR011009 -
Trre12g00536 688 Pfam Protein tyrosine and serine/threonine kinase 529 652 IPR001245 GO:0004672|GO:0006468
Trre12g00536 688 Pfam Malectin-like domain 35 419 IPR024788 -
Trre12g00536 688 Gene3D - 229 421 - -
Trre12g00536 688 Gene3D - 32 196 - -
Trre12g00536 688 FunFam FERONIA receptor-like kinase 32 196 - -
Trre12g00536 688 Gene3D Transferase(Phosphotransferase) domain 1 507 663 - -
Trre12g00536 688 PANTHER OS03G0124300 PROTEIN-RELATED 7 490 IPR046957 GO:0004672
Trre12g00536 688 FunFam FERONIA receptor-like kinase 228 420 - -
Trre12g00536 688 FunFam receptor-like protein kinase FERONIA 484 599 - -
Trre12g00536 688 MobiDBLite consensus disorder prediction 41 76 - -
Trre12g00536 688 ProSitePatterns Protein kinases ATP-binding region signature. 529 552 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00536 Trre-Chr12 4290743 4294301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00536 27 646 Receptor kinase-like Gene Family AT3G51550 43.865 5.25e-152 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre12g00536 Malectin_like 1.6e-34 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00536 - - psat:127121083 960.674