LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g00535	ATGAAACCATTAATCAACTTCAAAACCTTCATCACAACTCTCATCTACTTTTCCATCTCCCTCCATAACCTTCAAGCCTACGACCCAGTTGACCGTTTTACCCTCAACTGTGGCACAGAAGGAAACTCTACTGACGGACAAAGAACATGGACAGGAGACACAAACTCAAAACTTTTGTCATCATCTCAAAACAACCCAACAACAACAGTTTCTGTTCCAACAACAACACAAAAATCTTCAATCAACAAAATTCCATATTCAACGGCACGTTTATCACACACAATATTCAACTACTCATTTCCCGTCGCTACAGGTCCTAAATTCCTCCGTCTATTTTTCTACCCTTCTACTTATACCAACGGTTTTAACCGTCACGATGCTTCTTTCACCGTTATTTCCAACGGTTTCACACTTCTTAAGGATTTTAATGCTTCATTAAATGCTGATGTTGAAGGTGTTGATACTTTAGTGAAAGAATATGTTATTAACGTTGGTGAGGATCAAAGGCTTGATTTGAGTTTCATTCCAAGTAATGGAAATTCTAATAATTATGCTTTCATCAATGGAATTGAAGTCATATCCATGCCTAATGATCTCTATTATACACCACCTGAAGATAATGGATTTCCACTTGTGGGGACCACCATCTCACCGGCATATACTATTCCAACCACCGTTGCACTACAGACAGATTACAGGATCAAAGTTGGACCGCAACCAAACTCACCAGACATTAGAGACACAGGCATGCTCAGAAACTGGAACATCAACGACACGGTTTATTTAAAAACTCCAACGTCACGTGACTTTGTCTCAGGAGATGTAACACGTACGAGTAATATCACCATAACCCCAGATTACGTGGCACCCAAAGAACTCTTCGTATCATCACGTGACTTGGGCACAAACTCCACTCTCAACCAACTCTTAAACCTGACTTGGGAATTCCCCGTTGATTATGGCTTCTTTTACTTGATCAGGCTCCACTTTTGTGAACTCGACCCCAGGATAACCAAAGCGGGTGATAGAGTCTTCACCATCTATTTACAAGGACAAATGGCGTTAGAACAAGCTGATGTTATGAAATGGACTGAAAATCAAATAGGCGTTGCTGTGCAACGAGACTACGCCATTTCAATTCCAAAGAGTAATACTAATAATAACAAGAAAGTGAATCTCTCTCTTGAAATGCATCCTTATGGTAATGGTGATAGTCGACATACCATATACAGTGACCCATTTTTAAATGGACTTGAAATTTTCAAAATTAGTGATTACGGTGCGAAGAATCTAGCTGGACCCAACCCAGATCCGATTCAGAATCCAAATAAACCGAATTTGGTTCAAAAGAATAAGAAAAGCATAAGTGGAACGACACTAATTGGTGTCGTTTTGGGAGCTGTATTTGGTGTTATCTTAGTTTTCATTGTTGTTTTCTTCGTTTTTAGAAGTAAAAGGAAAACCAAAGGGGAAATGGCTACAACGATAAAAGAATCAAAGTCTTCAGCGACTTCGAAGTGGGGTCCATTGTCGTTTTCAACGACGAAATCAAGCACACAAAACTCACTGCCGTCAGATCTCTGTCGTAGTTTTTCTCTTATCGAGATACGTGCTGCCACGAATAACTTTGATGAACTCTTCATAGTTGGTGTTGGAGGATTCGGCCACGTGTACAAAGGCTACATTGACAATGGTTCAACACCGGTCGCGATCAAGAGACTCAAACCGGGTTCACAACAAGGTGAAAATGAGTTCATCAATGAGATTGACATGCTCTCAAAGCTTCGTCATCTTCACCTCGTTTCTTTAATCGGTTACTGCAACGAGAATAATGAAATGATCATTGTTTATGATTACATGGAACGTGGAACTTTACGTGATCATCTCTATAACACGGAGAATCCTGCTTTATCATGGAAACAAAGGTTGCAGATTTCAATAGGTGCGGCTCGTGGGTTACATTACCTTCATACAGGTGCGAAACACACAATCATTCACCGTGATGTGAAAACGACGAATATTCTGTTAGATGAGAAATGGATTGCAAAGGTTTCTGATTTTGGGCTTTCGAGAATTGGGCCTACAGGTGTTACTAAGGCCCATGTTAGCACTGTTGTTAAAGGGAGTGTTGGTTATTTAGATCCTGAGTATTACAAACGACAACGTTTAACTGAGAAATCTGACGTGTACTCATTTGGTGTGGTTTTATTTGAGATACTATGTGCTCGACCGCCTCTAATTAGAACTGCGGAGAAGAAACAGGTGTCACTTGCTGATTGGGGGAGGTATTGTTATAAAAACGGGACCCTAGGGAGCATTGTGGACCCTTCGGTGAAGTGGAGTATAGCGCCAGAGTGTTTGAGAAAATTCGGAGAGATTGCAGTCAGCTGTTTGTTAGACGATGGAACAATGAGACCATCGATGAATGATGTTGTTTGGATGTTGGAGTTTGCATTGCAGTTACAAGAGAGTTCGGAACAGCGTGAGGGTGTTGTTATTCCGCATACTCTTGGCCGGATTGATGACGTGGAAGGTGAGAAAAGAGGCGAAAATGATGATGTGTTTAGTAGTGGAACAAGTGTGGCACATGTTTCAGATTTTAATAAGAGTAGTGAAGTGAGTGCTAGTACTGTGACTACTAGTAGTAGTGGCTATGGTTATAATAAGGAAAGTGTTTTCTCTGAAATTGTGGATCCAAAAGCACGTTGA	2709	0.4068	MKPLINFKTFITTLIYFSISLHNLQAYDPVDRFTLNCGTEGNSTDGQRTWTGDTNSKLLSSSQNNPTTTVSVPTTTQKSSINKIPYSTARLSHTIFNYSFPVATGPKFLRLFFYPSTYTNGFNRHDASFTVISNGFTLLKDFNASLNADVEGVDTLVKEYVINVGEDQRLDLSFIPSNGNSNNYAFINGIEVISMPNDLYYTPPEDNGFPLVGTTISPAYTIPTTVALQTDYRIKVGPQPNSPDIRDTGMLRNWNINDTVYLKTPTSRDFVSGDVTRTSNITITPDYVAPKELFVSSRDLGTNSTLNQLLNLTWEFPVDYGFFYLIRLHFCELDPRITKAGDRVFTIYLQGQMALEQADVMKWTENQIGVAVQRDYAISIPKSNTNNNKKVNLSLEMHPYGNGDSRHTIYSDPFLNGLEIFKISDYGAKNLAGPNPDPIQNPNKPNLVQKNKKSISGTTLIGVVLGAVFGVILVFIVVFFVFRSKRKTKGEMATTIKESKSSATSKWGPLSFSTTKSSTQNSLPSDLCRSFSLIEIRAATNNFDELFIVGVGGFGHVYKGYIDNGSTPVAIKRLKPGSQQGENEFINEIDMLSKLRHLHLVSLIGYCNENNEMIIVYDYMERGTLRDHLYNTENPALSWKQRLQISIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWIAKVSDFGLSRIGPTGVTKAHVSTVVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLFEILCARPPLIRTAEKKQVSLADWGRYCYKNGTLGSIVDPSVKWSIAPECLRKFGEIAVSCLLDDGTMRPSMNDVVWMLEFALQLQESSEQREGVVIPHTLGRIDDVEGEKRGENDDVFSSGTSVAHVSDFNKSSEVSASTVTTSSSGYGYNKESVFSEIVDPKAR	902

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g00535	902	FunFam	FERONIA receptor-like kinase	32	196	-	-
	Trre12g00535	902	SMART	serkin_6	543	818	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g00535	902	Pfam	Protein tyrosine and serine/threonine kinase	549	812	IPR001245	GO:0004672\|GO:0006468
	Trre12g00535	902	FunFam	Receptor-like protein kinase FERONIA	620	835	-	-
	Trre12g00535	902	Gene3D	Phosphorylase Kinase; domain 1	507	619	-	-
	Trre12g00535	902	FunFam	Receptor-like protein kinase FERONIA	515	619	-	-
	Trre12g00535	902	Gene3D	Transferase(Phosphotransferase) domain 1	620	835	-	-
	Trre12g00535	902	MobiDBLite	consensus disorder prediction	44	73	-	-
	Trre12g00535	902	Gene3D	-	227	424	-	-
	Trre12g00535	902	Gene3D	-	32	196	-	-
	Trre12g00535	902	SUPERFAMILY	Protein kinase-like (PK-like)	517	818	IPR011009	-
	Trre12g00535	902	PANTHER	OS03G0124300 PROTEIN-RELATED	7	495	IPR046957	GO:0004672
	Trre12g00535	902	ProSitePatterns	Protein kinases ATP-binding region signature.	549	572	IPR017441	GO:0005524
	Trre12g00535	902	FunFam	FERONIA receptor-like kinase	226	424	-	-
	Trre12g00535	902	ProSiteProfiles	Protein kinase domain profile.	543	818	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g00535	902	CDD	STKc_IRAK	549	816	-	-
	Trre12g00535	902	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	664	676	IPR008271	GO:0004672\|GO:0006468
	Trre12g00535	902	Pfam	Malectin-like domain	35	423	IPR024788	-
	Trre12g00535	902	Coils	Coil	900	902	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g00535	Trre-Chr12	4281570	4285341	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g00535	27	902	Receptor kinase-like Gene Family	AT3G51550	48.394	0.0	752

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Trre12g00535		Malectin_like	3.3e-30	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g00535	-		-	psat:127121083	1439.09