Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00532 ATGAAATCGAAGCTAAGGTGGGAAAATGCACTCCAAGAGGCAGCTGGCCTTGCCGGATTTGTTGTCCTAAATTCTAGGAATGAAATGGAGGCAATCAAAGATATTGTTAGAAATGTTACACGTTTGCTTGACAAGACAGATTTGTTCATTGTTGAGAATCCAGTGGGAGTCGAATCTCGAGTACGAGATATGATCCAACGGTTAAACTTCCAAAAATCAAATGATATTTTACTATTAGGGATGTGGGGCATGGGAGGAGTTGGTAAAACTACCATTGCAAAAGCTATTTACAATAAAATTGGCCGCAAATTTGAAGGAAGAAGCTTCCTTGCAAATATTAGGGAAGTTTGGGAGCAAATATCTGGGCAAATTTATTTACAAGAACAACTTCTCTTTGATATCTGCAAAGAAACAAAAACTAAGATACAAAGCATTGAGTCAGGAAAAAGTTTATTAAAGGATAAACTCTCCCATAAAAGAGTACTTCTTGTACTTGATGATGTGAGTAGAATAGACCAACTAAATGCTTTATGTGGAAGTCATAAATGGCTTGGTTCAGGTAGTAGAATAATCATCACTACTAGAGATATGCACATACTTAGAGGGATTAGAGTTGACCAAGTGTACAAAATGAAAGAAATGGATAAAAGTGAGTCAATTGAACTTTTTAGTTGGCATGCATTCAAGAAATCAAGTCCTAAAGAAGATTTTCTTGACATTTCTCGAAATGTAGTTGAGTATTCTGGGGGATTGCCTCTAGCTCTGGAAGTCCTTGGATCATATTTGTTTGATAGGGGAATAGCAGAGTGGAAATGTGTATTGGAGAAACTCAAAAGAATTCCTAATGATGAAGTACACAAAAAGTTGAAAATAAGCTATGATGGTTTAAACGACGACACCTTAAAAGAAATATTCCTTGACGTTGCATGTTTCTTTATTGGGATGGATCGAAATGATGTTATACATATCTTAAATGGTTGTGAGCTTTTTGCAGAAATTGGAGTAAATGTCCTTGTTGAGCGAAGCCTGGTAACTATTGATGATAGGAACAAAGTTAGAATGCATGATTTGTTGCGTGATATGGGAAGAGAAATCATTCGCAAGAAATCACCAAAGGAGCCTGAGGAGCGTAGTAGGTTGTGGTTTGATAAAGATGTCCTTGATGTATTATCAGAGGAGACTGGAACAAAAACTGTTGAGGGATTGACTTTGAAGTTGGCAAGAGAAAATGCAAAATGCTTTAGTACTAAAGCATTCAAGAAGATGAAAAGACTCAGATTGCTTCAACTTGGTAGTATACAACTTGACGGAGATTTTCGATATCTTTCAAAAAATCTGAGATGGCTTCATTGGAATAGATTTCCTTTAAAATGTATTCCTTCAAGCTTTTATCAAGGAAATTTAGTTTCCATTGAGTTAGAAAACAGCAATATCAAACTTCTTTGGAAAGAGACTCAGAGGTTGGAGAAACTGAAAATCCTCAATCTTAGTCATTCTCGTTATCTGACGCAGACTCCAGATTTTTCAAACTTACCTAATCTTGAACAACTAGTACTCAGTGATTGTCCAAGGTTATCAGAGATTGAAAAGTTGGAAGAAGACTTGGAACAGATGGAATCTTTGACCACTTTGCTTGCAAACAATACATCAATTAAAAGTGTGCCTTTTGCATTAGTAAGGTCAAAAAGCATTGGATATATTTCTTTGTGTGGATATGAAGGATTTTCATGTGATGTTTTTCCGTCTATCATTATGTCTTGGATGTCTGCAACAAATAATCTCCATTCCCCGTTTCAAACATTGGCTTCCGTGTCATCTCTTGTGTCTTTAGATGTCCCCAAAAAAATTTCACATGAACTTTCGTCTTTTTCTAAACACCTTCCAAGTCTTCGAAGTCTTTGGGTAGATTGCAACTCCGAAGATCAACTTTCTCTCGATGCAAAAATAATTTTGGATGCTTTATTTTCTACGGTTTCTCAGGATTTGGAATCAACTGCAGCTAAGACACAGGTATCAAATATGCCTACTTCTACATTAATTCAATGTTGCAGTCAAGTGCATGTTTCTGGATCAAAACATTCCTTGGAGTTTCTTTTGATTCAAATGGGAATGAATTGCCAAGTCACGAGTTTTCTCAAAGAGAAAATTTTACAGGACATGGATGTCAATGGGAGTGGTGGTTGTTTCCTCCCCGGTGATAATTATCCAAATTGGTTAACTTTTAGTTCTGAAGGTTCTTCAGTTACTTTTGAAGTCCCTCAAGTGAAAGGGCGTAACTTGAGGACAATAATGTGCATTGTCTATACTTCAACCATAGATAACACAACCTTAGATGGCCTTAAAAACGTGTTGGTGAAAAATTACACGAAGGCAACCATTCAGCTTTATAAGAGAGAGGCATTAGTCTCCTTTGAAGATGAGGAGTGGAAGAGGATAGTATCAAGTATAGAACCCGGTAACAGAGTGGAGCTCATTTTTGTTTTCGAGAATGATTTCATTGTTGGAAAGACAGCAGTTTATCCGTGTTGGGAATTCGACGATAAAATCACACCAATAACCTTTAGTGTGTGGAGCAAACGATTAAAGCAACCACAAATTGAGAACAGACAATAA 2613 0.3662 MKSKLRWENALQEAAGLAGFVVLNSRNEMEAIKDIVRNVTRLLDKTDLFIVENPVGVESRVRDMIQRLNFQKSNDILLLGMWGMGGVGKTTIAKAIYNKIGRKFEGRSFLANIREVWEQISGQIYLQEQLLFDICKETKTKIQSIESGKSLLKDKLSHKRVLLVLDDVSRIDQLNALCGSHKWLGSGSRIIITTRDMHILRGIRVDQVYKMKEMDKSESIELFSWHAFKKSSPKEDFLDISRNVVEYSGGLPLALEVLGSYLFDRGIAEWKCVLEKLKRIPNDEVHKKLKISYDGLNDDTLKEIFLDVACFFIGMDRNDVIHILNGCELFAEIGVNVLVERSLVTIDDRNKVRMHDLLRDMGREIIRKKSPKEPEERSRLWFDKDVLDVLSEETGTKTVEGLTLKLARENAKCFSTKAFKKMKRLRLLQLGSIQLDGDFRYLSKNLRWLHWNRFPLKCIPSSFYQGNLVSIELENSNIKLLWKETQRLEKLKILNLSHSRYLTQTPDFSNLPNLEQLVLSDCPRLSEIEKLEEDLEQMESLTTLLANNTSIKSVPFALVRSKSIGYISLCGYEGFSCDVFPSIIMSWMSATNNLHSPFQTLASVSSLVSLDVPKKISHELSSFSKHLPSLRSLWVDCNSEDQLSLDAKIILDALFSTVSQDLESTAAKTQVSNMPTSTLIQCCSQVHVSGSKHSLEFLLIQMGMNCQVTSFLKEKILQDMDVNGSGGCFLPGDNYPNWLTFSSEGSSVTFEVPQVKGRNLRTIMCIVYTSTIDNTTLDGLKNVLVKNYTKATIQLYKREALVSFEDEEWKRIVSSIEPGNRVELIFVFENDFIVGKTAVYPCWEFDDKITPITFSVWSKRLKQPQIENRQ 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00532 870 Gene3D - 41 209 IPR027417 -
Trre12g00532 870 Gene3D - 213 297 IPR042197 -
Trre12g00532 870 Gene3D - 1 40 IPR035897 -
Trre12g00532 870 SUPERFAMILY L domain-like 403 645 - -
Trre12g00532 870 Coils Coil 528 548 - -
Trre12g00532 870 Gene3D Ribonuclease Inhibitor 365 663 IPR032675 -
Trre12g00532 870 Pfam NB-ARC domain 58 292 IPR002182 GO:0043531
Trre12g00532 870 SUPERFAMILY "Winged helix" DNA-binding domain 284 390 IPR036390 -
Trre12g00532 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 307 IPR027417 -
Trre12g00532 870 PRINTS Disease resistance protein signature 248 262 - -
Trre12g00532 870 PRINTS Disease resistance protein signature 486 502 - -
Trre12g00532 870 PRINTS Disease resistance protein signature 155 169 - -
Trre12g00532 870 PRINTS Disease resistance protein signature 78 93 - -
Trre12g00532 870 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 656 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00532 Trre-Chr12 4244506 4247977 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00532 55 555 WRKY Transcription Factor Family AT5G45050 34.405 2.76e-75 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00532 - - lja:Lj0g3v0331109.1 1143.26