Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00525 ATGGGCGACGAGTTAATAGAAGGAGGAGCCAAGAAGGACGAGGGACCCTCCACTTTCGTTTTTAAACTCAATATTCATTGTGATGGATGCGCCAACAAAATTATAAAATGCGTTTGTAAATTCGACGGTGTGGAGAGTGTTAAAATCGATGCGCCTAGTAATAAACTGACGGTGATTGGAAAAGTGGACCCTGACAAGGTGCGAGATCAACTGGAGGCTAGAATTAAGAGGAAGAATCTCTTGAGTAGAATTTCAAAGGACGAAGACGAGTCCCTTTCAAAGGAGGAGGAGGAGGAAGACGAGTCTCTTTCAAAGGAGGAGGAAGATAAGTTGCTGCATTCTGAGTTGAGCTGGAGAGAGGCACTTCGATGGGCTGCTAACATTGCAGGATTTGTAGTCCTAAATTCCAAGAATGAAAGTAAGGCAATCAAGGATATTGTTGAAAAAATCACTCATTTGCTTGACAAGACAGAATTGTTCATTGCTGATAAACCAGTGGGAGTTGATTCTCGAGTGCAAGATGTTATTCAACTGCTAGACATCCAACAATCAAATGATGTACTACTACTTGGGATAGAAATCATTTGTGATAACCCACGGAAAGAGCCTGAGGAGCGTAGCAGGTTGTGGTTTCACGAGGATGTAGATGGTGTATTAGAAGGACAAACTGGAACAAAATCTGTTGAGGGATTGGCTTTGAAGTTGCCAAGAGATAGTGTAAAATGTTATAGTACTAAAGCATTTAAGAACATGAAGAAACTCAGATTGCTTCAACTTTCTGGAAATTTAGTTTCAATCGAGTTAGAAAACAGCAATGTCAAACTTATGTGGAAAGATACCCCGAGGATGGAGAAGCTGAAAATTCTTAATCTTAGTCATTCTCATTATCTGACACAGACACCAGACTTTTCGAAGATGCCAAATCTTGAAAAGCTAGTACTCATGGATTGTCCAAGGCTGTCTAAGTTGGAAGAGGACATAGAACAGATGGAATCTTTAACCACTTTAATTGCAAACAACACTGCAATAACAAGAGTTCCCTTTTCAGTAGTAAGGTCCAAAAGCATTGGATATATTTCTTTGTGCGGCTATGAAGGATTCTCACGTGATGTGTTCCCATCTATCATTATGTCTTGGATGTCACCAACATCTGGTCTTCCTTCCCCGTTTCAAACATCTACTATTGTGTCATCTGTTGTTCCTTTAGATGTATCGCATAGTAGTTCGTATGAACTATCATCAATTTCCAAGTACCTTCCAAGTCTTCGAAGTCTTTGGGTAGAGTGCAGCTCAGAACTTCAACTTTCTCATGATGCAGCAATCATTATGGATGCCTTATATGCCACAAATTATAAGGAGTTGGAACCAACTGCATCTACATCACAACTATCAAATATGACCACTTCTACATTAATTCAATGTTGTTGTAGTCAAGTGCATGTTTCAGGATCAAAACATTCCTTCAAGTCTCTTTTGATTCAAATGGGAATGAATTGCCAAGTCACTGATCTTGTGAAAGATAAAATTTTACAGAATATTGAAGTCAATGGATGTGATGGTTCTTTGCTCACCGATGATAGTTATCCAGATTGGTTAAGTTTCAGTTGTGAAGGTTCTTCTGTAACTTTTGAAGTTCCTCAAGTGGAAGGGCATAACTTGAAGACAATTATGTGTGTTGTCTATATTTCAACCCCTGATAACATTACATCGGATGGCCTTAAAAATGTGTTGGTAAAAAATTTCACCAAGGCTACCATTCAGCTCTATAAGAGAGAGGCATTAGTCTCCTTTGAAGATGAGGAGGGGCAGAGGGTAGTATCAAGTATGGAACGTGGTAACAAAGTGGAGGTTGCTGTTGTTTTCGAGAACAATTTCATTGTGAAGAATACAACAGTTTATCTTGTATATGAAGAACCAATTGGCAAAAAAAAGAACGCAATGAAGAAAAGTTCAATAGGTCTTGATTTCAGAGGAGTGTTTCTGTCATATTAG 1992 0.3896 MGDELIEGGAKKDEGPSTFVFKLNIHCDGCANKIIKCVCKFDGVESVKIDAPSNKLTVIGKVDPDKVRDQLEARIKRKNLLSRISKDEDESLSKEEEEEDESLSKEEEDKLLHSELSWREALRWAANIAGFVVLNSKNESKAIKDIVEKITHLLDKTELFIADKPVGVDSRVQDVIQLLDIQQSNDVLLLGIEIICDNPRKEPEERSRLWFHEDVDGVLEGQTGTKSVEGLALKLPRDSVKCYSTKAFKNMKKLRLLQLSGNLVSIELENSNVKLMWKDTPRMEKLKILNLSHSHYLTQTPDFSKMPNLEKLVLMDCPRLSKLEEDIEQMESLTTLIANNTAITRVPFSVVRSKSIGYISLCGYEGFSRDVFPSIIMSWMSPTSGLPSPFQTSTIVSSVVPLDVSHSSSYELSSISKYLPSLRSLWVECSSELQLSHDAAIIMDALYATNYKELEPTASTSQLSNMTTSTLIQCCCSQVHVSGSKHSFKSLLIQMGMNCQVTDLVKDKILQNIEVNGCDGSLLTDDSYPDWLSFSCEGSSVTFEVPQVEGHNLKTIMCVVYISTPDNITSDGLKNVLVKNFTKATIQLYKREALVSFEDEEGQRVVSSMERGNKVEVAVVFENNFIVKNTTVYLVYEEPIGKKKNAMKKSSIGLDFRGVFLSY 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00525 663 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 9 134 IPR044594 GO:0046872
Trre12g00525 663 Gene3D - 18 83 - -
Trre12g00525 663 MobiDBLite consensus disorder prediction 87 106 - -
Trre12g00525 663 MobiDBLite consensus disorder prediction 91 105 - -
Trre12g00525 663 Gene3D Ribonuclease Inhibitor 226 518 IPR032675 -
Trre12g00525 663 CDD HMA 25 73 IPR006121 GO:0046872
Trre12g00525 663 ProSiteProfiles Heavy-metal-associated domain profile. 16 83 IPR006121 GO:0046872
Trre12g00525 663 Pfam Heavy-metal-associated domain 21 75 IPR006121 GO:0046872
Trre12g00525 663 SUPERFAMILY HMA, heavy metal-associated domain 19 73 IPR036163 GO:0046872
Trre12g00525 663 SUPERFAMILY L domain-like 233 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00525 Trre-Chr12 4209805 4215252 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00525 178 317 WRKY Transcription Factor Family AT4G12020 30.769 1.93e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00525 - - cam:101512894 604.364