Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00522 ATGGACGACAAGCAAATAGAAGGAGGAGCCAAGAAGGACGAAGGACCCTCCACTTTCGTTCTTAAACTCCATATTCATTGTGATGGATGCGCCCACAAAATTATAAAATGCGTTCGTAAATTCGACGGTGTGGAGAGTGTTAAAATCGATCCGCCTAGTAATAAACTGACCGTTATTGGAAAAGTGGACCCTGACAAGGTGCGAGATCAACTGGAGGCTAAAACTAAGAAGAAGAATCTCTTGAATAGAATTTCAAAGGAGGAAGACGAGTCCCTTTCAGAGGAGGAGGAAGACGAGTCTCTTTCAAAGGAGGAGGAAGATAAATTGCTGCATTCTGAGTTGAGCTGGAGAGAGGCGCTTCGATGGGCTGCTAACATTGCAGGATGTGTAGTCCTAAATTCCAGGAATGAAAGTAAGGCCATCAAGGATATTGTTGAAAAAATCACTCATTTGCTTGACAAGACAGAATTGTTCATTGCTGATAAACCAGTGGGAGTTGATTCTCGAGTGCAAGATGTTATTCAATTGCTAGACATCCAACATTCAAATGATGTACTACTACTTGGGATGTATGAAAATGGAATAAGTGTCCTTGTTGAGCGAAGCTTAGTAACTATTAATGATAAAAACAAGCTTGGAATGCATGATTTGTTGCGGGATATGGGAAGAGAAATCATTTGTGATAACCCACGAAAAGAGCCTGAGGAGCGTAGCAGGTTGTGGTTTCACGAGGATGTAGATGGTGTATTAGAAGGACAAACTGGAACAAAATCTGTTGAGGGATTGGCTTTGAAGTTGCCAAGAGATAGTTGTCAAACTTATGTGGAAAGATACCCCGAGAATGGAGAAGCTGAAAATTCTTAA 864 0.4132 MDDKQIEGGAKKDEGPSTFVLKLHIHCDGCAHKIIKCVRKFDGVESVKIDPPSNKLTVIGKVDPDKVRDQLEAKTKKKNLLNRISKEEDESLSEEEEDESLSKEEEDKLLHSELSWREALRWAANIAGCVVLNSRNESKAIKDIVEKITHLLDKTELFIADKPVGVDSRVQDVIQLLDIQHSNDVLLLGMYENGISVLVERSLVTINDKNKLGMHDLLRDMGREIICDNPRKEPEERSRLWFHEDVDGVLEGQTGTKSVEGLALKLPRDSCQTYVERYPENGEAENS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00522 287 SUPERFAMILY "Winged helix" DNA-binding domain 174 250 IPR036390 -
Trre12g00522 287 SUPERFAMILY HMA, heavy metal-associated domain 19 74 IPR036163 GO:0046872
Trre12g00522 287 ProSiteProfiles Heavy-metal-associated domain profile. 16 79 IPR006121 GO:0046872
Trre12g00522 287 Gene3D - 18 83 - -
Trre12g00522 287 Coils Coil 70 97 - -
Trre12g00522 287 CDD HMA 24 73 IPR006121 GO:0046872
Trre12g00522 287 Pfam Heavy-metal-associated domain 25 76 IPR006121 GO:0046872
Trre12g00522 287 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 7 117 IPR044594 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00522 Trre-Chr12 4186839 4190291 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00522 194 266 WRKY Transcription Factor Family AT4G12020 35.616 1.07e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00522 - - cam:101512894 152.14