Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00520 ATGGAGTGTCATAGAACCATAGGTTTGATAGTGTTGCCAGTGTTCTATGATGTTGATCCTTCTGAGGTTCGTCACCAAACCGGTGAGGTTGGAAAAGCATTTCAGAGACTATTGAGTAGGATTTCGAATAAGAAAGATGTGTCTCTGAAATGGAGAGATGCTCTTTGTGAGGCTGCTGCACTTACTGGCTTTGTAGTTCTTAATTCCAGGAACGAAAGTAAGGACATCAAGGATATTACTGAAAACATTATTCGTTTTCTTGACAAGAAAGACTTGTTCATTGCTGATAAACCGGTGGGAGTTGATTCTCGAGTGCAAGATGTTATTCAACTGCTAGACATCAAACAATCGAATGATGTTCTACTACTTGGGATATGGGAAAATGGTATAAATGTACTTGTTGAGCGAAGCCTAGTAACTATTGATGATGAAAACAAGCTTGTAATGCACGATTTGTTGCGAGATATGGGAAGAGAAATCATTTGTAATAAACCACGAAAGGAGCCTGAGGAGCGTAGCAGGTTGTGGTTTCATGAGGATGTTGATAGTGTATTAGGAGGACAAACTGGAAAAAAAGATATTGAGGGATTGGCTTTGAAGTTGCCAAGACATGGTGCAAAATGTTATAGTACTAAAGCATTTGAGAAGATGAAGAAACTCGGATTGCTTCAACTTTCTGGTGTAACGCTTGATGGGGATTTTGAATATGTTTCGAGAAATTTGAGATGGTTTTCGTGGAATGGATTTCCTATGTCATGCATTCCTACAAACTTATATCTAGGAAATTTAGTTTCTATCGAGTTAGAAAACAACAATGTCAAACTTCTGTGGAAAGTGCCTCAGAGGATGGAGAATTTGAAAATTCTTAATCTTAGTCATTCACATTATCTGATGCAAACTCCAGACTTTTCAGACATGCCTAATCTTGAAAAACTTGTACTCAAAGATTGTCCAAGGTTGTATGCAGTTTCCCATAGCATTGGACATCTCAATAAAATTCTCCAGATAAATTTGGAAGATTGTATTAGCCTTACTAAACTTCCAAGAAGCATCTATAAGTTGAAATGTTTGAAAACTCTCATTCTTTCTGGGTGCATAAGGACTGACACATTGGAAGAGGATTTGGAACAAATGGAATCTTTAACCACTCTGATTGCAGATAACACATTAACACTGCAATAA 1182 0.3739 MECHRTIGLIVLPVFYDVDPSEVRHQTGEVGKAFQRLLSRISNKKDVSLKWRDALCEAAALTGFVVLNSRNESKDIKDITENIIRFLDKKDLFIADKPVGVDSRVQDVIQLLDIKQSNDVLLLGIWENGINVLVERSLVTIDDENKLVMHDLLRDMGREIICNKPRKEPEERSRLWFHEDVDSVLGGQTGKKDIEGLALKLPRHGAKCYSTKAFEKMKKLGLLQLSGVTLDGDFEYVSRNLRWFSWNGFPMSCIPTNLYLGNLVSIELENNNVKLLWKVPQRMENLKILNLSHSHYLMQTPDFSDMPNLEKLVLKDCPRLYAVSHSIGHLNKILQINLEDCISLTKLPRSIYKLKCLKTLILSGCIRTDTLEEDLEQMESLTTLIADNTLTLQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00520 393 Pfam TIR domain 1 84 IPR000157 GO:0007165
Trre12g00520 393 Gene3D Ribonuclease Inhibitor 206 392 IPR032675 -
Trre12g00520 393 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 63 IPR035897 -
Trre12g00520 393 SUPERFAMILY L domain-like 199 389 - -
Trre12g00520 393 Gene3D - 1 95 IPR035897 -
Trre12g00520 393 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 126 IPR044974 GO:0006952
Trre12g00520 393 SUPERFAMILY "Winged helix" DNA-binding domain 113 185 IPR036390 -
Trre12g00520 393 ProSiteProfiles TIR domain profile. 1 87 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00520 Trre-Chr12 4166886 4170323 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00520 283 384 WRKY Transcription Factor Family AT4G12020 36.275 9.41e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00520 - - tpra:123906985 427.557