Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00517 ATGTCTTCTTCCTTTAGCTTCCCCAATCTTATAAATGACACATACACAAAGAATCCCTCGAAAACAATAAAGATCCATGACGTGTTCTTAAGTTTTAGAGGCGAAGACACACGACTTTTCAAAGTGTTAAACTTTAAATCTGGATCGCCGAATCTGGAGCAAGAACGGAATTGGACAGCTGCGCTTCATGAGGTAGCAGGGTTTGCAGGATTTGTAGTACTAAATTCCAGGAACGAAAGTGAGGCTATCAAGGATATTGTTGAAAAAGTTGTGCGCGTGCTAAACAAGACAGACTTGTTTGTGGCTAATAATCCAGTGGGTGTTGAACCTCGAGTGGAAGATATGATTCAACTGCTAGAGAAAAAAATACCGCAACACACTAGTGAACTGCTACACTTTCAACCAATGCAAGCTCCAGTTCAGCTGCTACAGTTCCAACCAATGCAAGCTCCACATCAACCGCTATACTTCCAACCAATGCAAGCTCCAGTTCAACCCCTACAGTTCCAACCACTACAAGCTCCGGTTCAACTGCAACAGTTCCAACCAATGCAAGCTTCGTTTCAACCGCTACAACAGCAACAAATGCAAGCTTCGTTTCAACCGCTACAACAGCAACAAATGCAAGCTCCAAACCTACGATCAAAAGATGTTCTACTAATAGGGATGTGGGAAATTGGAATAAATGTTCTTGTGGAGCGTAGCCTTGTTACTGTTGATGATAGGAACAGGCTTGGAATGCATGATTTGTTGCGTGATATGGGAAGAGAAATCATTCGTGAGAAATCACCAAAGTATCCTGAAGAACGTAGCAGGTTATGGTTTAGTAAGGACGTGCTTAATGTGTTATCAGAACAAACGGGAACAAAAGTTGTTGAAGGCCTGACTTTGAAGTTGCAAAAAGCTGATGCAAAATGTTTTAGCACAAAAGCATTTAAAAATATGACAAGGCTGAGATTGCTTCAACTTGTTGGAGTACAACTTCATGGAGATTTTGAATACCTTTCAAGAAATTTGAGATGGCTTTCTTGGAATGGATTTCCCTTAACATGCATACCTACAAGCTTTTATCTAGGAAATTTAGTTTCCATCGAGTTAGTTAACAGCAATGTCGAATTTCTATGGAAAAAGGCTCAGAGGATGGAGAAGTTGAAAATTCTAAACCTTAGTCATTCGCATTCTCTGACACTGACCCCAGACTTTTCAAACATGCCTAATCTTGAAAAGCTAGTACTCACAGATTGTCCAATGTTGTCTGAGATTTCTCCTAGCATTGGACATCTCAATGAAATTGACAAATTGGAAGATGACTTGGAAGATATGAAATCTTTAACCACGCTAATTGCAAATAATACTGCAATAGCAAAAGTTCCCTTTTCAGTAGTAAGGTCGAAAAGCATTGGATATATTTCTTTGTGCGGTTATGAAGGATTCTCACATGATGTGTTTCCAGCTATCATTTGGTCTTGGATGTCACCGACAACCAATCTCCCATCCCCATTTCAAACATCGGCTGGATTGTCATCTCTCGTTCCTTTAGATGTACAAAATAGTAAATCCCATGAATTATCATCTATATCGAAGTACCTTCCATGGCTTCGATGTCTTTTGGTGGAGTGTTACTCAGAACTTCAACTTTCTCGAGACACAAAAATAATTTTGGATGCATTATATGCCTCAAATTCTAAAGAATTGGAATCAACTTCTACTTCACAAGTACCGATTGTGGAAACTTCTGCACTAATTCAATGCTACAGTCAAGTATCGAATGTGAAATCACTGTTTATTCAAATAGGAAGGAATTGCCAAGTTACTAAGATTCTGAAAGACATCATTTTACAGAATATGGGTGTCAACGGGTGTGGTGGTCAATTGCTTCCCAGTGATAGTTATCCAGATTGGTTGACCTTCAATTTCAAAGGTTCTTCTGTAATTTTTGAAATCCCTCGGGTGCAAGGGCGTAACTTAAAGACAATGATGTGCGTTATCTATTCTTCAACCTCGTATAACATAGCATCAGATGGCCTTAAAAATGTGTTGGTGAAAAATTACACAAAGGCCACCATTCAACTCTTTAAGAGAGAGGCGTTAGTCTCTTTTGAAGATGAGGAGGGCGAGAGGGTAGTCTCGAGTATAGAACCTGGAAATAAAGTAGAGGTTGTTGCTGTTTTTGAGAACAATTTTGTTGTCAAGGAAACAATAGTTTATCTTGTATATGATGAACCAGTTGGAGAAAAAAAGGAGAAATGTCTAGAACAAGAAAAAAATGATATTGTTTATGATGGTGATGATAAAGAAGGCACTGTGAGGACAAGCTCTCCGCAAGTGGAACTCGTGGATGAAACTGGTGGAACCGATAGTTGTTGTGGATTGATCAAATATAGTTTCAGACAGTGGATAACAGATTTTATGTGCAGATTAGTGGAGTGCAGGTGA 2436 0.392 MSSSFSFPNLINDTYTKNPSKTIKIHDVFLSFRGEDTRLFKVLNFKSGSPNLEQERNWTAALHEVAGFAGFVVLNSRNESEAIKDIVEKVVRVLNKTDLFVANNPVGVEPRVEDMIQLLEKKIPQHTSELLHFQPMQAPVQLLQFQPMQAPHQPLYFQPMQAPVQPLQFQPLQAPVQLQQFQPMQASFQPLQQQQMQASFQPLQQQQMQAPNLRSKDVLLIGMWEIGINVLVERSLVTVDDRNRLGMHDLLRDMGREIIREKSPKYPEERSRLWFSKDVLNVLSEQTGTKVVEGLTLKLQKADAKCFSTKAFKNMTRLRLLQLVGVQLHGDFEYLSRNLRWLSWNGFPLTCIPTSFYLGNLVSIELVNSNVEFLWKKAQRMEKLKILNLSHSHSLTLTPDFSNMPNLEKLVLTDCPMLSEISPSIGHLNEIDKLEDDLEDMKSLTTLIANNTAIAKVPFSVVRSKSIGYISLCGYEGFSHDVFPAIIWSWMSPTTNLPSPFQTSAGLSSLVPLDVQNSKSHELSSISKYLPWLRCLLVECYSELQLSRDTKIILDALYASNSKELESTSTSQVPIVETSALIQCYSQVSNVKSLFIQIGRNCQVTKILKDIILQNMGVNGCGGQLLPSDSYPDWLTFNFKGSSVIFEIPRVQGRNLKTMMCVIYSSTSYNIASDGLKNVLVKNYTKATIQLFKREALVSFEDEEGERVVSSIEPGNKVEVVAVFENNFVVKETIVYLVYDEPVGEKKEKCLEQEKNDIVYDGDDKEGTVRTSSPQVELVDETGGTDSCCGLIKYSFRQWITDFMCRLVECR 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00517 811 Gene3D Ribonuclease Inhibitor 282 635 IPR032675 -
Trre12g00517 811 SUPERFAMILY "Winged helix" DNA-binding domain 224 283 IPR036390 -
Trre12g00517 811 SUPERFAMILY L domain-like 297 603 - -
Trre12g00517 811 Gene3D - 40 102 IPR035897 -
Trre12g00517 811 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 215 563 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00517 Trre-Chr12 4155471 4159980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00517 225 415 WRKY Transcription Factor Family AT4G12020 35.885 7.67e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00517 - - cam:101512894 795.808