Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00511 ATGGAGTGTCATAGAACCATAGGGCAGATAGTGTTGCCTGTTTTCTATGATGTTGATCCTTCAGAGGTTCGTCACCAAACTGGTGAGTTTGGAAATGCTTTTCAAAATCTCTTGACCAGAGCTTCAATGGAGGAAGATGCGTCGCTGAAATGGAGAGATGCTCTTCGTGAAGCTGCTGCCCTTGCTGGCTTTGTAGTTCTTAATTCCAGGAATGAAAGGGAGACTATCGATCATATTGTTGAAAAACTTACTCTTTTGCTTGACAAGACAGACTTATTCGTTGCTGATAATCCAGTGGGAGTCGAATCTCGAGTGCAAGATACGATTCAACTTCTAGACATCCAACAATCAGATGATGTTCTGTTACTAGGGATGTGGGGTATGGGGGGAACCGGTAAAACAACCATTGCAAAAGCCATTTACAACAAAATTGGCCGCAATTTTGAAGGTAGGGGTTTCCTTGCAAATATTAGGGAAACTTGGAAGCAAACTGCTGGAAAAGTATCTCTACAAGAACAGCTTTTGTGTGATATCTTCAAAGAAACAACAACCAAGATACAAAACATTGAGTCTGGCAAAATTATATTAAAGGATAGGTTGTGTCATAAAAGAGTACTTCTTGTACTTGATGATGTGAGAAGTTTGGACCAGTTAAATGTTTTATGTGGAAGTCATGAATGGTTTGGTTCAGGAAGTAGAATAATAATCACAACCAGAGATAAACATATAATTAGGGGGAATAGAGTTGATAAAGTATACACAATGAAAGAAATGGATGTAACTGAATCAGTTGAACTGTTTAGTTGGAATGCATTCAAGCAAGCAAGTGCTAGAAAAGATTTTGCTGAAATTTCCAACAAAATTGTTGAGTACTCTGGGGGATTGCCACTAGCACTGGAAGTCCTTGGTTCCTATTTGTTTGACAGGGGAGTAACAGATTGGAACTGTGTATTGGAGAAAATCAAATTAATTCCCAATGATCAAGTACAAGAGAAGTTAAAAATAAGCTATGATGGTTTAAATGACGATACCATGAAAGAAATATTCCTCGACATAGCTTGTTTCTTTATTGGGATGGACCGAAATGATGTTATACAGATATTAAATGGATGTGGACTTTTTGCAGAAGTCGGAATAAATGTCCTTGTTGAGCGAAGTCTTGTAACTGTTGATGATAAGAACATGCTTGGGATGCATGATTTGTTACGGGATATGGGAAGAGAAATCATTCGTGAAAAATCACCAAAGGAACCTGAGGAGCGCAGCAGGTTATGGTTTCACAAAGATGTGCTCGGTGTTTTAATTGAACGAACTGGAACAAAAGCAGTTGAGGGACTAGCTTTGAATTTGCCAATAGCTAGTTCAAAATGTTTTAGTACTAAAGCATTTAAGAAGATGAAGAGACTTAGATTGCTTCAACTTGCTGGGAGGTTGGAGATGCTGAAAATCCTAAACCTTAGTCACTCTCATTATCTGACACAGACCCCCGACTTCTCAAATTTGCCTAATCTTGAAAAGCTGGTACTCACAGATTGTCCTAGGTTGTCTGAGGTTTCCAATAGGTGTTTAATGATTGACAAGTTGGAAGAGGATTTGGAACAGATGGAATCTTTAACCGCTCTAATTGCAAATAACACTGCAATAACAAGAGTGCCATTTTCAGTTGTTAGGTCAAAAAGCATTGGATATATCTCTTTATGCGGCTATGAAGGATTTGCACGTGATGTGTTTCCATCTATCATTTTGTCTTGGATGTCACCAACAAATAATCTCACATCCCCATTTCAAACATATGCTGCCATGTCATCTCTTGTTTCTTTAGATCTACCAAATAGTAATTCCCATGACCTATCATCTTTTTCGAACCAACTTCCAAGGCTGCGAAGTCTTTGGGTGGATTGCAAATCCGAATATCAACTTTCTCTAGATGCAAAAATAATTTTGGATGCTTTATTTGCTACAGATTCTAAGGAATTGGAATCAAATGCAACTACATCACAAGTATCGAATATGACTCCTTCTACATTAATTCAATGCTGCAGCCAAATGCAAGTTTCAAGATCAAAGCATTCCTTTAATTCTCTTTTAATTCAAATGGGAATGAATTGCCAAGTCACCAGTATACTAAAAGGGAAAATTTTAAAGAATATAGATGTCAATGGGAGTGGTGGTTGTTTGCTCCCTGGCGACAGTTATCCAGATTGGTTAACCTTTAATTCTAAAGGTTCTTCTGTAGCTTTTCAAGTCCCTCAAGTGGAAGATCGTAACTTGAAAACAATGATGAGCGTTGTTTACACTTCATCGCCAGATAACATAACATCAGATGGTCTTAGAAACGTGTTAGTGATAAATCACACAAAGGCAACCATTCAGCTCTATAAGAGTGAGGCATTGGTCTCCTTTGAAGATGAGGAGGGGCAGAGACTGGTATCAAGTATAGAACCCGGAAACAAAGTGGAGGTTGTTGTTGTTTTTGGAAAAGGTTTCATTGTCAAGAAGACAACAATTTATCTCGTATATGATGAACCAATCGGTAAGAAATTGGAGCAATGTCATGTACCAGATTCGAATGTCATTGCTTGTAGTGATGATGAAAATGAACGCTTTGCCAAGAGATTATCTAATCAAGAGGAATCCACTGATGACTTCAATCAGAACAGAAAGAAGAAAAGTCGAGTGGAATGA 2685 0.381 MECHRTIGQIVLPVFYDVDPSEVRHQTGEFGNAFQNLLTRASMEEDASLKWRDALREAAALAGFVVLNSRNERETIDHIVEKLTLLLDKTDLFVADNPVGVESRVQDTIQLLDIQQSDDVLLLGMWGMGGTGKTTIAKAIYNKIGRNFEGRGFLANIRETWKQTAGKVSLQEQLLCDIFKETTTKIQNIESGKIILKDRLCHKRVLLVLDDVRSLDQLNVLCGSHEWFGSGSRIIITTRDKHIIRGNRVDKVYTMKEMDVTESVELFSWNAFKQASARKDFAEISNKIVEYSGGLPLALEVLGSYLFDRGVTDWNCVLEKIKLIPNDQVQEKLKISYDGLNDDTMKEIFLDIACFFIGMDRNDVIQILNGCGLFAEVGINVLVERSLVTVDDKNMLGMHDLLRDMGREIIREKSPKEPEERSRLWFHKDVLGVLIERTGTKAVEGLALNLPIASSKCFSTKAFKKMKRLRLLQLAGRLEMLKILNLSHSHYLTQTPDFSNLPNLEKLVLTDCPRLSEVSNRCLMIDKLEEDLEQMESLTALIANNTAITRVPFSVVRSKSIGYISLCGYEGFARDVFPSIILSWMSPTNNLTSPFQTYAAMSSLVSLDLPNSNSHDLSSFSNQLPRLRSLWVDCKSEYQLSLDAKIILDALFATDSKELESNATTSQVSNMTPSTLIQCCSQMQVSRSKHSFNSLLIQMGMNCQVTSILKGKILKNIDVNGSGGCLLPGDSYPDWLTFNSKGSSVAFQVPQVEDRNLKTMMSVVYTSSPDNITSDGLRNVLVINHTKATIQLYKSEALVSFEDEEGQRLVSSIEPGNKVEVVVVFGKGFIVKKTTIYLVYDEPIGKKLEQCHVPDSNVIACSDDENERFAKRLSNQEESTDDFNQNRKKKSRVE 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00511 894 Pfam NB-ARC domain 103 322 IPR002182 GO:0043531
Trre12g00511 894 Gene3D - 1 94 IPR035897 -
Trre12g00511 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 352 IPR027417 -
Trre12g00511 894 Gene3D Ribonuclease Inhibitor 435 671 IPR032675 -
Trre12g00511 894 Coils Coil 525 545 - -
Trre12g00511 894 Gene3D - 95 251 IPR027417 -
Trre12g00511 894 Pfam TIR domain 1 83 IPR000157 GO:0007165
Trre12g00511 894 PRINTS Disease resistance protein signature 199 213 - -
Trre12g00511 894 PRINTS Disease resistance protein signature 122 137 - -
Trre12g00511 894 PRINTS Disease resistance protein signature 476 492 - -
Trre12g00511 894 PRINTS Disease resistance protein signature 292 306 - -
Trre12g00511 894 MobiDBLite consensus disorder prediction 870 894 - -
Trre12g00511 894 SUPERFAMILY L domain-like 398 633 - -
Trre12g00511 894 Gene3D - 258 341 IPR042197 -
Trre12g00511 894 ProSiteProfiles TIR domain profile. 1 87 IPR000157 GO:0007165
Trre12g00511 894 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 655 IPR044974 GO:0006952
Trre12g00511 894 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 63 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00511 Trre-Chr12 4116172 4120117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00511 1 474 WRKY Transcription Factor Family AT4G12020 31.866 3.01e-62 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00511 - - tpra:123910008 1229.54