Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00507 ATGACATCAATGAAGGATGAAAATCAAGAATTGCAGAAGCAAATTGGATGTATCAGTGGATTTTTCCAGCTGTTTGATCGTCATAGGTTCCTCACAAGCCATAACAACAGCAGCAACAGTCACAATATACCAAATCAAGGGGGAACAGAGAATAACATCAAAGAGCTGAATAATACAACACAAAAGGCAAAGGTAAAGAATGTGAAGGTGGCAAGAGAGAATCAACAATCCTCCACAGAATCATCATCGGGAATATCAATGTCTTCATCGTCTTGTTCATCTAGCATGTCATCCCTCGAGTTTAACAGAACAATACAGATAGAACCGCCATCAGTAAGTCCAATGAAAATCACCGAAAACTCCAAATCAGAACCAGAAATGAAGCAACTTGGCAGCCAAAGACATCAGCCCCTTGATTTCCTTGATATTGTAAAAGACTCCATGCATATAGATTCACAAAGATTATCGGTGAAAACTCTGGCTAAAGAGGAAAAGAAGAATCGAATCTTGAAACACATAGACTCTCCGCGGCCTATGACAGCTTGGGATTCTCCAAGACTCTCCTATGATGGGAGAGATATACAAAGCACACTCAAATCTGCAACGAAGCACAAGGAACTCCCAAGGCTTTCCTTGGACAGCAAGGTAAGGTCCATCAAAAGTTTCAACGAAGGAGCAAAAAATCGGAACCTTTTGAAGGGTCCACAGAGAGGGAGTGGAGGCTCTAACACACTGGTCAAGCAGATGGAAGAACCAGACACTTCTAAAAGACCATCAAGTGTTGTGGCAAAGTTGATGGGACTAGAAGCATTCCCTGATTGGAGCGAAACTTGTGATATCTGCAACACCGACAAAGATGAGACCTTTGCAGGATCTAGAATGAGTGATGAATACATGCAACAGAAAGATTCGGAATTCTCAAGGACAACCAAAGGGACTACTTTGATTCAATCTCGGAGGGATGGTTCGATCACAAATGTGACACCATATTCACTACAGGCTTCCAAGAGTAGTGAAGCTTCAATAAAAGCATCAAACCGATCCCTCTCAGTTTATGGTGAAATTGAGAAAAGGATGGCGGATCTGGAGTTCACAAAATCCGGAAAGGATCTTAGAGCCCTTAAACAGATTCTTGAAGCAATGCACAGATACAAAGAATCATTAGATACTACAAGTGACCAGGCTTCAAATTCTCCATATGACAATAGGAGTAATAGTAGTGTCAGTGAAAGCTCAAATTTACAAAGCCCAAGAACACGGCAGAAGAACCCGACATCTGTCACAGTTGAGAGATTGAATTCAACTCAGGGTAGTAAATCTCCAATTGTCATCGTGAAATCAACAAAGGTTGCAAGAAAAACAAATAATTCTTCCACAGAAATGTCAATCAATGTTAAACCCTTGGGTAGCAAGGTTTCACGCAGCGATCCTACCAATGGAATGTTGGTTGGCAAGCTTGGCAGGCAAACAGCAAAAGGTAGTCCAGCAATCAAGCATGTCAGAGATCCTACTAGTCCACCTTTTCGTTCAGTGGATAAAAGCAATAAGATGAGAACTTCAAAATTGATGCAATCCTCAAAAGTTCCTCGAGTCATCATTGGAGAAAACAACACCAACTCCAGCATTATGGTAGAGACCAAGAGCCCGAGACTTCAAAAGAAGTTCGGTTTAGAGAGGCGTTCCCCGCCAAGCAGCCCATCATCAGACATCAGCAGTAACAGAAGACAGCAAAATAGGCAATCAATGGAATTGTCTTCCCCGAGAACACCATCTAGACAAAAAATCTCAACTTTGCAGGAAAGAAATGAAAAGGACTCGAGCAAGGAAAGCTTTATTGCTGAAACAATAGTTACTGCAGAACAACCTAGTCCTGTGTCCGTTCTTGATGCCGCGTTCTATAGAGAAGATCCACCTTCTCCAGTAAAAAGGAAAACAAGCATCTCAAAAGATTTAGATGAAGTTCTGAACACTTATGATACTAGCGAGGAGGACTCGGAAGACACAAAAGTCAACTTCAGCAATGGAACCAGTGATATTGACATGATAACTCATAATTTAGTTCAAATTCTGCAACAATTTGAACACAGTGACGATGAAAGATTCACGAGTTTCAGTGACCACAAAGATCCCAACCACAAATATATATCAGAAATACTACTAGCGTCGAGGCTGCTTGCCAGTCCCAGATCTAGCCAGGCATTGCATTCATCAGATTACCCGATTAACCCAATGTTGTTTCTTGCACTAGAGAAAATAAAGACAAACAAGATGCATGGTAACATTGCTAATATGAACAATCATGAGAAAATGCAAAGAAAGCTCATCTTTGATGTCGTTAATGAAATGCTATTTCAAAAGCTAATATCTGAGAGTTCTTACAAGCCATTTCAGCAAAAAGGAACAAAACCAGAAGGACAGCATCTTTTGGATACGCTTTGCACAGAAATTGATAAGTTACAACATAAAAATAGGAATATCAGCCTGGCTAATGAGGATGAGTATTTGACAAGTATCCTGTTAGAAGATTTGGTGCAGCGACCTACAAATACAGAATGCTACCGGGAGATACCAAATGTTGTGTTGGATATTGAAAGATTGATTTTCAAAGATTTGATAACTGAAGTTGTGAGAACTGAGAAGTGA 2643 0.4052 MTSMKDENQELQKQIGCISGFFQLFDRHRFLTSHNNSSNSHNIPNQGGTENNIKELNNTTQKAKVKNVKVARENQQSSTESSSGISMSSSSCSSSMSSLEFNRTIQIEPPSVSPMKITENSKSEPEMKQLGSQRHQPLDFLDIVKDSMHIDSQRLSVKTLAKEEKKNRILKHIDSPRPMTAWDSPRLSYDGRDIQSTLKSATKHKELPRLSLDSKVRSIKSFNEGAKNRNLLKGPQRGSGGSNTLVKQMEEPDTSKRPSSVVAKLMGLEAFPDWSETCDICNTDKDETFAGSRMSDEYMQQKDSEFSRTTKGTTLIQSRRDGSITNVTPYSLQASKSSEASIKASNRSLSVYGEIEKRMADLEFTKSGKDLRALKQILEAMHRYKESLDTTSDQASNSPYDNRSNSSVSESSNLQSPRTRQKNPTSVTVERLNSTQGSKSPIVIVKSTKVARKTNNSSTEMSINVKPLGSKVSRSDPTNGMLVGKLGRQTAKGSPAIKHVRDPTSPPFRSVDKSNKMRTSKLMQSSKVPRVIIGENNTNSSIMVETKSPRLQKKFGLERRSPPSSPSSDISSNRRQQNRQSMELSSPRTPSRQKISTLQERNEKDSSKESFIAETIVTAEQPSPVSVLDAAFYREDPPSPVKRKTSISKDLDEVLNTYDTSEEDSEDTKVNFSNGTSDIDMITHNLVQILQQFEHSDDERFTSFSDHKDPNHKYISEILLASRLLASPRSSQALHSSDYPINPMLFLALEKIKTNKMHGNIANMNNHEKMQRKLIFDVVNEMLFQKLISESSYKPFQQKGTKPEGQHLLDTLCTEIDKLQHKNRNISLANEDEYLTSILLEDLVQRPTNTECYREIPNVVLDIERLIFKDLITEVVRTEK 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00507 880 MobiDBLite consensus disorder prediction 390 440 - -
Trre12g00507 880 MobiDBLite consensus disorder prediction 233 256 - -
Trre12g00507 880 MobiDBLite consensus disorder prediction 539 609 - -
Trre12g00507 880 MobiDBLite consensus disorder prediction 508 523 - -
Trre12g00507 880 MobiDBLite consensus disorder prediction 489 523 - -
Trre12g00507 880 PANTHER LONGIFOLIA PROTEIN 3 608 IPR033334 GO:0051513
Trre12g00507 880 MobiDBLite consensus disorder prediction 33 94 - -
Trre12g00507 880 MobiDBLite consensus disorder prediction 561 596 - -
Trre12g00507 880 MobiDBLite consensus disorder prediction 235 249 - -
Trre12g00507 880 MobiDBLite consensus disorder prediction 388 440 - -
Trre12g00507 880 Pfam Domain of unknown function (DUF4378) 712 874 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00507 Trre-Chr12 4069667 4073854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00507 135 879 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 31.270 1.27e-64 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00507 - - cam:101511926 1218.76