Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00506 ATGTCTAAAAAGGCTATGACATCAATGAAGGATGAAAATCAAGAATTGCAGAAGCAAATTGGATGTATCAGTGGATTTTTCCAGCTGTTTGATCGTCATAGGTTCCTCACAAGCCATAACAACAGCAGCAACAGTCACAATATACCAAATCAAGGGGGAACAGAGAATAACATCAAAGAGCTGAATAATACAACACAAAAGGCAAAGGTAAAGAATGTGAAGGTGGCAAGAGAGAATCAACAATCCTCCACAGAATCATCATCGGGAATATCAATGTCTTCATCGTCTTGTTCATCTAGCATGTCATCCCTCGAGTTTAACAGAACAATACAGATAGAACCGCCATCAGTAAGTCCAATGAAAATCACCGAAAACTCCAAATCAGAACCAGAAATGAAGCAACTTGGCAGCCAAAGACATCAGCCCCTTGATTTCCTTGATATTGTAAAAGACTCCATGCATATAGATTCACAAAGATTATCGGTGAAAACTCTGGCTAAAGAGGAAAAGAAGAATCGAATCTTGAAACACATAGACTCTCCGCGGCCTATGACAGCTTGGGATTCTCCAAGACTCTCCTATGATGGGAGAGATATACAAAGCACACTCAAATCTGCAACGAAGCACAAGGAACTCCCAAGGCTTTCCTTGGACAGCAAGGTAAGGTCCATCAAAAGTTTCAACGAAGGAGCAAAAAATCGGAACCTTTTGAAGGGTCCACAGAGAGGGAGTGGAGGCTCTAACACACTGGTCAAGCAGATGGAAGAACCAGACACTTCTAAAAGACCATCAAGTGTTGTGGCAAAGTTGATGGGACTAGAAGCATTCCCTGATTGGAGCGAAACTTGTGATATCTGCAACACCGACAAAGATGAGACCTTTGCAGGATCTAGAATGAGTGATGAATACATGCAACAGAAAGATTCGGAATTCTCAAGGACAACCAAAGGGACTACTTTGATTCAATCTCGGAGGGATGGTTCGATCACAAATGTGACACCATATTCACTACAGGCTTCCAAGAGTAGTGAAGCTTCAATAAAAGCATCAAACCGATCCCTCTCAGTTTATGGTGAAATTGAGAAAAGGATGGCGGATCTGGAGTTCACAAAATCCGGAAAGGATCTTAGAGCCCTTAAACAGATTCTTGAAGCAATGCACAGATACAAAGAATCATTAGATACTACAAGTGACCAGGCTTCAAATTCTCCATATGACAATAGGAGTAATAGTAGTGTCAGTGAAAGCTCAAATTTACAAAGCCCAAGAACACGGCAGAAGAACCCGACATCTGTCACAGTTGAGAGATTGAATTCAACTCAGGGTAGTAAATCTCCAATTGTCATCGTGAAATCAACAAAGGTTGCAAGAAAAACAAATAATTCTTCCACAGAAATGTCAATCAATGTTAAACCCTTGGGTAGCAAGGTTTCACGCAGCGATCCTACCAATGGAATGTTGGTTGGCAAGCTTGGCAGGCAAACAGCAAAAGGTAGTCCAGCAATCAAGCATGTCAGAGATCCTACTAGTCCACCTTTTCGTTCAGTGGATAAAAGCAATAAGATGAGAACTTCAAAATTGATGCAATCCTCAAAAGTTCCTCGAGTCATCATTGGAGAAAACAACACCAACTCCAGCATTATGGTAGAGACCAAGAGCCCGAGACTTCAAAAGAAGTTCGGTTTAGAGAGGCGTTCCCCGCCAAGCAGCCCATCATCAGACATCAGCAGTAACAGAAGACAGCAAAATAGGCAATCAATGGAATTGTCTTCCCCGAGAACACCATCTAGACAAAAAATCTCAACTTTGCAGGAAAGAAATGAAAAGGACTCGAGCAAGGAAAGCTTTATTGCTGAAACAATAGTTACTGCAGAACAACCTAGTCCTGTGTCCGTTCTTGATGCCGCGTTCTATAGAGAAGATCCACCTTCTCCAGTAAAAAGGAAAACAAGCATCTCAAAAGATTTAGATGAAGTTCTGAACACTTATGATACTAGCGAGGAGGACTCGGAAGACACAAAAGTCAACTTCAGCAATGGAACCAGTGATATTGACATGATAACTCATAATTTAGTTCAAATTCTGCAACAATTTGAACACAGTGACGATGAAAGATTCACGAGTTTCAGTGACCACAAAGATCCCAACCACAAATATATATCAGAAATACTACTAGCGTCGAGGCTGCTTGCCAGTCCCAGATCTAGCCAGGCATTGCATTCATCAGATTACCCGATTAACCCAATGTTGTTTCTTGCACTAGAGAAAATAAAGACAAACAAGATGCATGGTAACATTGCTAATATGAACAATCATGAGAAAATGCAAAGAAAGCTCATCTTTGATGTCGTTAATGAAATGCTATTTCAAAAGCTAATATCTGAGAGTTCTTACAAGCCATTTCAGCAAAAAGGAACAAAACCAGAAGGACAGCATCTTTTGGATACGCTTTGCACAGAAATTGATAAGTTACAACATAAAAATAGGAATATCAGCCTGGCTAATGAGGATGAGTATTTGACAAGTATCCTGTTAGAAGATTTGGTGCAGCGACCTACAAATACAGAATGCTACCGGGAGATACCAAATGTTGTGTTGGATATTGAAAGATTGATTTTCAAAGATTTGATAACTGAAGTTGTGAGAACTGAGAAGTGA 2658 0.4048 MSKKAMTSMKDENQELQKQIGCISGFFQLFDRHRFLTSHNNSSNSHNIPNQGGTENNIKELNNTTQKAKVKNVKVARENQQSSTESSSGISMSSSSCSSSMSSLEFNRTIQIEPPSVSPMKITENSKSEPEMKQLGSQRHQPLDFLDIVKDSMHIDSQRLSVKTLAKEEKKNRILKHIDSPRPMTAWDSPRLSYDGRDIQSTLKSATKHKELPRLSLDSKVRSIKSFNEGAKNRNLLKGPQRGSGGSNTLVKQMEEPDTSKRPSSVVAKLMGLEAFPDWSETCDICNTDKDETFAGSRMSDEYMQQKDSEFSRTTKGTTLIQSRRDGSITNVTPYSLQASKSSEASIKASNRSLSVYGEIEKRMADLEFTKSGKDLRALKQILEAMHRYKESLDTTSDQASNSPYDNRSNSSVSESSNLQSPRTRQKNPTSVTVERLNSTQGSKSPIVIVKSTKVARKTNNSSTEMSINVKPLGSKVSRSDPTNGMLVGKLGRQTAKGSPAIKHVRDPTSPPFRSVDKSNKMRTSKLMQSSKVPRVIIGENNTNSSIMVETKSPRLQKKFGLERRSPPSSPSSDISSNRRQQNRQSMELSSPRTPSRQKISTLQERNEKDSSKESFIAETIVTAEQPSPVSVLDAAFYREDPPSPVKRKTSISKDLDEVLNTYDTSEEDSEDTKVNFSNGTSDIDMITHNLVQILQQFEHSDDERFTSFSDHKDPNHKYISEILLASRLLASPRSSQALHSSDYPINPMLFLALEKIKTNKMHGNIANMNNHEKMQRKLIFDVVNEMLFQKLISESSYKPFQQKGTKPEGQHLLDTLCTEIDKLQHKNRNISLANEDEYLTSILLEDLVQRPTNTECYREIPNVVLDIERLIFKDLITEVVRTEK 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00506 885 MobiDBLite consensus disorder prediction 38 99 - -
Trre12g00506 885 MobiDBLite consensus disorder prediction 566 601 - -
Trre12g00506 885 MobiDBLite consensus disorder prediction 240 254 - -
Trre12g00506 885 PANTHER LONGIFOLIA PROTEIN 1 613 IPR033334 GO:0051513
Trre12g00506 885 Pfam Domain of unknown function (DUF4378) 717 879 IPR025486 -
Trre12g00506 885 MobiDBLite consensus disorder prediction 393 445 - -
Trre12g00506 885 MobiDBLite consensus disorder prediction 395 445 - -
Trre12g00506 885 MobiDBLite consensus disorder prediction 544 614 - -
Trre12g00506 885 MobiDBLite consensus disorder prediction 513 528 - -
Trre12g00506 885 MobiDBLite consensus disorder prediction 494 528 - -
Trre12g00506 885 MobiDBLite consensus disorder prediction 237 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00506 Trre-Chr12 4069667 4073869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00506 1 884 TRM (TON1 Recruiting Motif) Superfamily AT5G15580 29.319 5.13e-66 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00506 - - cam:101511926 1226.08