Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00502 ATGGCACAATCATCAACATCTCTCAAAGTTCATCAAGTTCTTTCAATATCACCACAAAATGAAACCTCACCAACCACTTTTCCCTTCACATTCTTTGACACCTTTTGGCTAAAACTCCCACCAGTTGAACGTCTCTTCTTCTATGAACACACAAATTTATCAACCACTTTTTTCTTTGAATCCATTCTTCCAAATCTCAAACACTCTCTTGAACTCACCCTCCAACACTTTCCTCTTCTTGTTGGTAATATCACATGGCCACAAGATTCATATCACCCTATTATCAACTATGTCCCTAGTGATTCTATCTCTTTCATTGTAGCTGAATCCAATGAAAATTTCAACCTTGTATGTTCCAATCTATGTGAAGCTGAAAAAAGACACCCCTTTGTCCCAAAATTAAATATTTCAGATGAAAAATCATCAATTATTTCACTACAAGTCACTTTTTTTCCTAACCATGGATTTTGTATTGGTATAACCACACACCATGCAGGTGTTGATGGAAAATCTTCAACTTTATTTATGAAAGTTTGGTCATATTTTTGCTCCAACCTTGAAAAAAAATCACCCTCTTTATCTTTACCTCAAAATCTAACACCTTTTTCTGATAGGTCCATTATCAAAGACCCTTTAGGAATAAATGAAATATATTCAAAAGGATGGTCAAATTTTGGTGGTGAAACAAATAATAGAAGCTTGAAGGTTTGGGAAACAATTAGTGCAACAAAAGGTGAAGCAATGAAAGGTCATTTTGAATTTTCACCTTTGCATATTCAAAAGCTTAAGAAATATGCACAATCCAAACTTGAAAATAAAAAAATTTCAACTTTTGCTATTACTTGTGCTTATTTGTTGGCATGTGCAGTCAAAGTTGACCAACCAAATTCCAATAAGGTGGCTTTTGTTTTTAGTGTGGATTGTAGGCCACGTTTGGATCCACCAATTAGTCCAAATTATTTTGGGAATTGTATTGTGTCACAATTGGTTGTAGGTGACACTGAGGCATTATTGAAAGAGGATGGATTTATTAGTGCTCTAGAAGGGATACTTAATGTGTTGAATTTAGAAAAAGGGGTGTTACATGAGGCAGAAATTTGGATGTTAAAGATACAATCAATTATGAGTGAGACTAATAGGTTGTTTTCTATTGCTGGCTCACCTAGGTTTGAGGTTTATAGTTTTGATTTTGGATGGGGAAAGCCTAAGAAAGTTGATGTTACTTCTATTGACAAAACGGGTGCTTTTTCTCTTTCGGAGAATAGGAATAATGATGGTGGAGTTGAGATTGGTTTGGCTTTGAACAAGCAACAAATGGAGAAATTTGCTCAACTTTTTGTTCAAGGACTTGAATCTTTGTAA 1362 0.3465 MAQSSTSLKVHQVLSISPQNETSPTTFPFTFFDTFWLKLPPVERLFFYEHTNLSTTFFFESILPNLKHSLELTLQHFPLLVGNITWPQDSYHPIINYVPSDSISFIVAESNENFNLVCSNLCEAEKRHPFVPKLNISDEKSSIISLQVTFFPNHGFCIGITTHHAGVDGKSSTLFMKVWSYFCSNLEKKSPSLSLPQNLTPFSDRSIIKDPLGINEIYSKGWSNFGGETNNRSLKVWETISATKGEAMKGHFEFSPLHIQKLKKYAQSKLENKKISTFAITCAYLLACAVKVDQPNSNKVAFVFSVDCRPRLDPPISPNYFGNCIVSQLVVGDTEALLKEDGFISALEGILNVLNLEKGVLHEAEIWMLKIQSIMSETNRLFSIAGSPRFEVYSFDFGWGKPKKVDVTSIDKTGAFSLSENRNNDGGVEIGLALNKQQMEKFAQLFVQGLESL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00502 453 Pfam Transferase family 15 444 - -
Trre12g00502 453 Gene3D - 246 453 IPR023213 -
Trre12g00502 453 Gene3D - 8 234 IPR023213 -
Trre12g00502 453 PANTHER - 8 452 - -
Trre12g00502 453 SUPERFAMILY CoA-dependent acyltransferases 273 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00502 Trre-Chr12 4035108 4036469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00502 130 448 Monolignol Biosynthesis Gene Families AT5G48930 22.404 1.39e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00502 - K13264 gmx:100127426 526.168