Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g00499 ATGTTTTCAACTTCAATTATCATCAAATGGAGTTCCTTTACTCAATTCAACTTCATCTTCTTCTTCTCCATTTTTCTCTTCTCAGCCTCTCAATACGACGCCGTTTCACCCAATTCCGACAAATCAACTCTTCTCCGTCTCAAAAACTCCCTCTCCGACCCCGCCGGAGTTCTCTCTTCATGGAGCTCTTCCTCCGGCCACTGTTCCTGGTATGGTGTTCACTGTGATTCAAACTCCCGCGTCGTTGCTCTCAACATCACCGGTGCCGGAGATGGTAACCGGAGTTCTCACCCGTGTTCTGATTTTGGTATGTTTCCGCTTTATGGATTTGGAATTAGGAGACGCTGTTTGGGTTTTAAGGGTTCTTTGTTTGGAAAGTTTCCATCTTTGATCAGTGAGTTAACTGAGCTTAGGGTTTTGTCTTTACCTTTCAATGGGTTGGAGGGTTCAATTCCTCAAGAGATTTGGAGTATGGAGAAACTTGAAGTTCTTGATTTAGAAGGTAATTTCATTAGTGGTTATTTACCTTTTAAATTTCAAGGTTTGAGAAAATTGAGGGTATTGAATTTGGGATTTAATAAGATAGTTGGAATGGTACCTAGTGTTTTATCTTCTCTTGAGAGTTTGGAGGTTTTGAATTTAGCTTCAAATAATTTGAATGGTTCTGTTCCTGGTTTTGTTGGGAAGTTTAGAGGGGTGTATTTGTCTTTTAATCAATTTAGTGGAGTTATTCCCGAGGAGATTGGTGAGAATTGTGGGAAGCTTGAGCATTTGGATTTGTCTGGTAACTCTTTGGTTGAACGGATTCCGAAGAGTTTGGGGAATTGTGTTGGGTTGAGGACACTTTTGTTGTATTCAAATTTGTTGGAAGAGGGTATTCCTGCTGAATTTGGGAACCTTAAGAGTCTTGAGGTGTTGGATGTTTCAAGGAATACGCTTGATGGTTCTATTCCTCGTGAGCTTGGGAATTGTAAGGAGCTTTCTGTTGTTGTGCTTTCCAACCTTTTCGATCCAGTTGGGGATGCTGGGTTTCTTAGTTTGAACGATGAGTTGAATTATTTTGAAGGTTCAATGCCCGAGGAAGTTGTGTCACTTCCTAAGCTTAGGATTTTGTGGGCTCCCAGGGTGAATTTGGAGGGAAGTTTTCCTAGGAGTTGGGGTGCTTGTGCTAACTTGGAGATGGTCAATTTGGCTCTGAATTTTTTCACCGGAGAGTTCCCAAACCGGCTCGGTTTATGCAAGAAGCTGCATTTTCTTGATCTGAGCTCAAACAATCTTACCGGGGAGCTTTCTGAGGAACTGAATGTTCCATGTATGACTGTGTTTGATGTTAGTGCTAACATGTTGTCTGGTTCAGTTCCTGATTTCTCCAATAATGTTTGTTCTCCCTTTCCTTTATGGAACGAGAATCTGTTCGAAACTGACGATGCTGCCTCTCCCTATGCATCATATTTCTCATCGAAAGTTCATGAGGGAACCCTTTTCACATCACTAGGAGGAGTCGGTCTTTCAGTTTTTCACAACTTTGGGCAAAACAACTTCACCGACATTCAGTCATTGCCAATAGCACGTGACAGGATGGAGGAAAAAAGTAGTTACACACTTTTAGTCGGAGAGAACAAGCTAACGGGACTATTTCCTGCATATTTATTTGAGAAATGTGACGGATTAGATGCATTGCTTTTGAATGTCAGTTACAATAGCCTTTCCGGTGATATTCCTTCTAATATTAGTAGAATGTGCAAATCTCTGAAATTTTTAGATGCATCTGGAAATCAAATTTCAGGACCAATTCCCCTTGGTTTAGGGGATTTGGTCTCTCTTGTTTCCCTGAACCTAAGTGGAAACCAGTTACAAGGTCATATTCCCACCAGTATCGGACAGATGAAGGATCTGAAGTTTCTTTCTTTGGCTGGTAATAACTTGAGTGGCTCAATTCCTTCCAATATGGGGCAGCTGTACTCTTTACAGGTCTTGGACCTTTCTACAAACTCTCTTACTGGTGAGATTCCAAAGTTTATCGAGAACATGAGAAATCTGACGAATGTTATGCTCAATAACAACAACCTTTCTGGATACATTCCTTCTGGTTTGGCAAATGCCACTTCACTCTCTGCATTCAACGTGTCTTTCAATAACTTATCTGGATACTTGCCATCAAATAGTAGCCTGATCAAATGCAGCAGTGCTGTTGGGAATCCGTTTCTAAGTTCCTGCCGTGGAGTTTCTCTGACTGTGCCATCGGCAAATCAACAAGAGCAGGTTGATGAAAATTCTCCTACTACGTCACAAACTACTGAAAAAAAGAGCGATAATGGTTTCAATGCCATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTTCTTATAGCCCTTATTGTTCTGTTTTTCGTCACGCGAAAGTGGAAGCCGAGGTCGAGGGTTGGTGGTTCCATTAAAAGAGAAGTTACTGTTTTTACTGATATTGGTGTCCCGGTGACATTTGAAAATGTTGTCCAAGCCACGGGAAATTTCAATGCAAGCAACTGTATAGGGAGTGGAGGATTCGGCGCAACTTATAAGGCAGAGATATCACAAGGAATCTTGGTTGCAGTGAAACGTCTTTCGGTTGGACGTTTCCAAGGTTTTCAACAATTCCATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAACCTTGTAACGTTGATTGGCTACCATGCTAGTGAGACAGAGATGTTTCTCATATACAATTATCTTCCAGGCGGTAATCTTGAAAAGTTCATCCAAGAGAGATCTACAAGGGCTATGGATTGGAAAATTCTTCACAAGATTGCATTAGACATAGCGCGCGCACTTTCCTATCTGCATGATCATTGTGTACCGCGTGTTCTTCATCGTGATGTCAAACCTAGCAATATCTTGTTGGACGACGATTTCAACGCTTATCTATCCGACTTTGGACTGGCAAGACTTCTCGGAACTTCAGAGACACATGCCACAACTGGTGTGGCAGGAACGTTTGGGTACGTTGCTCCTGAATACGCCATGACATGTCGTGTTTCCGATAAAGCTGATGTGTATAGCTATGGTGTGGTGCTTCTTGAGTTGCTATCCGATAAAAAATTATTGGACCCTTCATTTTCTTCTTATGGAAATGGTTTCAATATAGTAGCGTGGGGATGCATGCTACTGAGTCAAGGAAGGGCAAAGGAGTTTTTTGCTACAGGTTTATGGGATGCCGGACCGGAAAATGATTTGGTAGAGGTTCTTCACTTAGCAGTTGTTTGTACTGTTGATTCATTATCAACTAGACCTACAATGAAACAGGTTGTGCGAAGGCTAAAGCAACTTCAACCCCCATCATGCTAG 3363 0.4184 MFSTSIIIKWSSFTQFNFIFFFSIFLFSASQYDAVSPNSDKSTLLRLKNSLSDPAGVLSSWSSSSGHCSWYGVHCDSNSRVVALNITGAGDGNRSSHPCSDFGMFPLYGFGIRRRCLGFKGSLFGKFPSLISELTELRVLSLPFNGLEGSIPQEIWSMEKLEVLDLEGNFISGYLPFKFQGLRKLRVLNLGFNKIVGMVPSVLSSLESLEVLNLASNNLNGSVPGFVGKFRGVYLSFNQFSGVIPEEIGENCGKLEHLDLSGNSLVERIPKSLGNCVGLRTLLLYSNLLEEGIPAEFGNLKSLEVLDVSRNTLDGSIPRELGNCKELSVVVLSNLFDPVGDAGFLSLNDELNYFEGSMPEEVVSLPKLRILWAPRVNLEGSFPRSWGACANLEMVNLALNFFTGEFPNRLGLCKKLHFLDLSSNNLTGELSEELNVPCMTVFDVSANMLSGSVPDFSNNVCSPFPLWNENLFETDDAASPYASYFSSKVHEGTLFTSLGGVGLSVFHNFGQNNFTDIQSLPIARDRMEEKSSYTLLVGENKLTGLFPAYLFEKCDGLDALLLNVSYNSLSGDIPSNISRMCKSLKFLDASGNQISGPIPLGLGDLVSLVSLNLSGNQLQGHIPTSIGQMKDLKFLSLAGNNLSGSIPSNMGQLYSLQVLDLSTNSLTGEIPKFIENMRNLTNVMLNNNNLSGYIPSGLANATSLSAFNVSFNNLSGYLPSNSSLIKCSSAVGNPFLSSCRGVSLTVPSANQQEQVDENSPTTSQTTEKKSDNGFNAIEIASITSASAIVSVLIALIVLFFVTRKWKPRSRVGGSIKREVTVFTDIGVPVTFENVVQATGNFNASNCIGSGGFGATYKAEISQGILVAVKRLSVGRFQGFQQFHAEIKTLGRLHHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAMDWKILHKIALDIARALSYLHDHCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKLLDPSFSSYGNGFNIVAWGCMLLSQGRAKEFFATGLWDAGPENDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g00499 1120 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 917 1119 - -
Trre12g00499 1120 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 805 916 - -
Trre12g00499 1120 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 651 730 - -
Trre12g00499 1120 ProSiteProfiles Protein kinase domain profile. 841 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00499 1120 Gene3D Ribonuclease Inhibitor 37 230 IPR032675 -
Trre12g00499 1120 ProSitePatterns Serine/Threonine protein kinases active-site signature. 961 973 IPR008271 GO:0004672|GO:0006468
Trre12g00499 1120 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515
Trre12g00499 1120 SMART serkin_6 841 1119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00499 1120 SMART LRR_typ_2 252 276 IPR003591 -
Trre12g00499 1120 SMART LRR_typ_2 158 181 IPR003591 -
Trre12g00499 1120 SMART LRR_typ_2 677 701 IPR003591 -
Trre12g00499 1120 SMART LRR_typ_2 653 676 IPR003591 -
Trre12g00499 1120 SMART LRR_typ_2 300 324 IPR003591 -
Trre12g00499 1120 SMART LRR_typ_2 182 205 IPR003591 -
Trre12g00499 1120 SMART LRR_typ_2 206 228 IPR003591 -
Trre12g00499 1120 SMART LRR_typ_2 605 629 IPR003591 -
Trre12g00499 1120 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Trre12g00499 1120 SUPERFAMILY L domain-like 297 458 - -
Trre12g00499 1120 Pfam Protein kinase domain 844 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g00499 1120 FunFam LRR receptor-like serine/threonine-protein kinase 579 650 - -
Trre12g00499 1120 SUPERFAMILY Protein kinase-like (PK-like) 824 1112 IPR011009 -
Trre12g00499 1120 MobiDBLite consensus disorder prediction 749 769 - -
Trre12g00499 1120 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 344 520 - -
Trre12g00499 1120 Gene3D Phosphorylase Kinase; domain 1 805 916 - -
Trre12g00499 1120 SUPERFAMILY L domain-like 534 739 - -
Trre12g00499 1120 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 245 336 - -
Trre12g00499 1120 Gene3D Ribonuclease Inhibitor 337 465 IPR032675 -
Trre12g00499 1120 Gene3D Ribonuclease Inhibitor 231 336 IPR032675 -
Trre12g00499 1120 SUPERFAMILY L domain-like 37 335 - -
Trre12g00499 1120 CDD STKc_IRAK 847 1115 - -
Trre12g00499 1120 PRINTS Leucine-rich repeat signature 653 666 - -
Trre12g00499 1120 PRINTS Leucine-rich repeat signature 416 429 - -
Trre12g00499 1120 Gene3D Ribonuclease Inhibitor 508 748 IPR032675 -
Trre12g00499 1120 ProSitePatterns Protein kinases ATP-binding region signature. 847 869 IPR017441 GO:0005524
Trre12g00499 1120 Pfam Leucine Rich Repeat 254 276 IPR001611 GO:0005515
Trre12g00499 1120 Gene3D Transferase(Phosphotransferase) domain 1 917 1117 - -
Trre12g00499 1120 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 235 1114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g00499 Trre-Chr12 4007620 4010982 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g00499 34 1120 Receptor kinase-like Gene Family AT3G02130 64.190 0.0 1362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Trre12g00499 Pkinase 5.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g00499 - - gmx:100819882 1640.94